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12-3781-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29635624 [Map]; Strand: c
      • AT1G78820.1 - [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3781-1 - 5-prime edge 
    CTCCCGAGAA ACAATTCAGA GTGCTCAACG AACCCGGCTA CGCCCCATAC 
    ATCACCGAGT ACGACGCGAG TTACCGATTC CTCAACTCAC AGAATCAGAA 
    TTTCTTCACA ATTCCTTTCC AGCTCATGTT TTACAATACA ACTCCTAGCG 
    CCTACGTGTT AGCTCTCCGA GTCGGAACGA GGCGTGACAT GAGTTTCACG 
    CGTTGGATCT GGGACGCCAA TCGCAACAAC CCCGTCGGAG ACAACTCCAC 
    ACTCTCATTC GGCCGAAACG GAAACCTTGT GCTCGCTGAG TTAAACGGCC 
    AAGTCAAGTG GCAGACTAAC ACAGCCAACA AAGGCGTCAC CGGATTCCAA 
    ATCTTGCCCA ATGGAAACAT GGTGCTACAC GACAAACATG GAAAATTCGT 
    TTGGCAGAGT TTCGATCATC CCACCGATAC ACTCCTCGTC GGCCAATCCC 
    TAAAAGTTAA CGGAGTTAAC AAACTCGTTA GCCGTACATC TGATATGAAC 
    GGCTCCGATG GTCCGTACAG CATGGTGTTG GACAACAAAG GCTTAACCAT 
    GTACGTTAAC AAAACCGGTA CGCCGTTAGT TTACGGGGGA TGGACGGATC 
    ACGACTTCCG CGGTACCGTC ACGTTCGCCG TTACAAGAGA GTTCGATAAT 
    TTAACGGAGC CGTCAGCTTA CGAGCTTCTC TTANAACCCG CACCACACCC 
    GNTACGAACC CGGGTAATAA CCGCCGGTAC TCCAAGTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29635740 [Map]; Strand: c
      • AT1G78820.1 - [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3781-1 - 3-prime edge 
    CTCGGGAGGG ACTTGGGCCA TGACAACCGA AACAGTTGAA ATGGCAAGTG 
    CCGTGATTAG TAAGTAATCA AACCTAAGCA TGGTTGTGTT CTTTATGTTT 
    ACTGAGATTG AGTAGTAGAG TGAGATGATT TTCTATATCC TTTAGGTGTA 
    TATATAAGAT CTTAACTTTG GGTCGTTGGG CTGTATTCGT TTGAAAGTCC 
    TAAGTTTTTT TTTTTTTTTT TTNAANGGGC CCAANCCCCA ANCCCGNTTT 
    TTTTTTNANA AAAANNCCNA GGGGCNTTTT TNNANTNGGN AAAAAANTTT 
    NNCCCNNAAA NTTTNAAAAA NTTTTNTTTT TNNNAAANNN NGGGNNAAAN 
    NCCCAANTTT TTTTTTTNGG NNNAANCCCN TTTTTTTNNN NNAATTTTNN 
    TNANNNAANN CCNAAAAAAN TNNNCNAAAA AANNNNCCCC NTTTTTTTNN 
    AAAAAAAAAA NTTAAANTNN CCCNCNGGGT TTNNNNNTTA AANCCNTNNT 
    TTTAAAAAAA AAAGGGCCCC CTTTAAAACC NTTAANCNGG AAAAAANNTT 
    TTAAAAANCC NTTTAAAANN GNCANTCCCC CCCNCCCNTT TTTNNTNNNT 
    NCCCNAANTN NGNAANTTTN GGGAAAAAAA ANCCCCCCCC TTNCCNAAAN 
    NNNTTNAAAA NTNNCNNNNT TTNNNNNNNN NTNTNAAANN NNNNNCNNAA 
    NNNNTTTTTT TTTTTTNAAA NNNNAAAAAA NNANNNNCCC TTTTTTTCNC 
    CCCCNA

AT1G78820.1

Model type
Protein coding
Short Description
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Computational Description
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: Curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78830.1); Has 2616 Blast hits to 2560 proteins in 84 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 2610; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR