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12-3783-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4335407 [Map]; Strand: c
      • AT5G13485.1 - [+] show detail - transposable element gene
        Distance: -724; Region: promoter
      • AT5G13490.1 - [+] show detail - ADP/ATP carrier 2
        Distance: -60; Region: promoter
      • AT5G13490.2 - [+] show detail - ADP/ATP carrier 2
        Distance: -232; Region: promoter
    Flanking Genome Sequence: 12-3783-1 - 5-prime edge 
    ATTCTCTTTG TGGGGAAGAG GCGAGTTTTG ACACGAGCCT TTTATTGGCT 
    CCAGAAATAG GGTCACACTA GAAAGAATCA AGTGTAACGC ACTATTCTAT 
    ACACTCGGGG ACTTGTAGGA CCGTTAGATC ATCGAGATTG AAATTGTGAG 
    CCGTTGATTG TAATTACTAA AATGAATAAT ATAATTATGG AAGTATACGA 
    CTGCGTTATC GGCCGTAGAT CATGCCACCT ATTTGGCGCC GGAAATGTGG 
    AATGTTATTG GCCATTGACG GGTTTTTGTA GTCAACTGTC TACACGGTAA 
    CGTTTCAAAT ATTTCTTAGT TTATATTTTT TTTTGGTCAA AGNGCTTTAA 
    TCTTTAATAT TTGTTTTGAA CAACAGTATA TTTACAAAAA AAAANGGNGT 
    TTNGGAANGA AAAAAAAAAA AAANNAANNA NNCCCCNTTT TTNNCCCCCC 
    NGGGNNCCNT TNCCCCCCCC CCNNCCNGGG GGGNNNNNNG NAAAAATTTT 
    NGGGGGGCCN TTNNNGGGGC NNTTNNGGGG GGNNNNTTTT TTTGGNNAAA 
    AATTTTAAAN NGGNAAGGGN NTNAAAANNG GGGGGNANGG NTNNGGAANC 
    CCCCTCCNCC CCNCCCAAAA NTTTTTCCCC TTTCTTTTNA AAAAATTAAA 
    AACCCNNGTT TTTTTTTNNA CCNAAAAANG GNNNTNNGNC CNTTGGGGGG 
    GCCCCCCNCC TTTTTGTTNN NNNCNANGGG NGGN

AT5G13485.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 6.7e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR

AT5G13490.1

Model type
Protein coding
Short Description
ADP/ATP carrier 2
Curator Summary
Encodes mitochondrial ADP/ATP carrier
Computational Description
ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G13490.2

Model type
Protein coding
Short Description
ADP/ATP carrier 2
Curator Summary
Encodes mitochondrial ADP/ATP carrier
Computational Description
ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: mitochondrial envelope, mitochondrion, mitochondrial inner membrane, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 20201 Blast hits to 12470 proteins in 482 species: Archae - 0; Bacteria - 0; Metazoa - 9190; Fungi - 5149; Plants - 3866; Viruses - 0; Other Eukaryotes - 1996 (source: NCBI BLink).
Link
InterPro Scan - TAIR