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12-3788-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27422612 [Map]; Strand: c
      • AT1G72870.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-3788-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG ATCATGTCAT GATAACTCTG CTTCCGGCAC 
    CGAGCCAATG GGTAACCACC ATGGCATTTT TATATAGTTC ACTCTTAGTA 
    TCTTCAATAC CATCAACAAC AAGCAGGACT TTTTGGTTTA CAAGACTTGG 
    TTTGATGGCA TCAAAGATGT CATCGGAACT CCTTGTCTTT GTAAGATGTG 
    TTAGTAAACT TGGTGAGATG CGGTTTTGAT GGTTTTTTTT TACATTGGTT 
    AGGAAGCAGT GGTGTTGAAA GTGGCCTGAN ATGTCGTCNA AAACACATTC 
    AGCGAGTGTC GTTTTACCCA CGCCTTGGAT ACCCCAAATG CCAACTGTAC 
    GGACATGGTT CTTANATTCC AAATCCAGCA ATCCATANAT AGCTTTCTTA 
    TGACNATACA TCCCAACAAN ACCGTTGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27422632 [Map]; Strand: c
      • AT1G72870.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-3788-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTAGTCATGC GGAGTAAAAT ATGAGATGGA GTGTCTGAGA TATGAGGAAG 
    CTCTTCAACT CTTCTCTTTA TACGCTTTCA AGACAACATA CCCCCTTATT 
    GGTTTTGAAC AGTTCTCCAT TCGTGCTGTT CACTTTGCTG GACGTCTTCC 
    TCTGGCCCTC AAAGTACTCG GTTCATTTTT ATATGATAAA GACGAAGAGA 
    GTTGGAAAAG AACATTGCGC AAGCTCGAAG CATCACAATA TTATGGTAGC 
    AGCCAGATAT CTAACTACAT CGGGGGAGGT GAATACCTTT CAAGACGTCA 
    ACTATAACTG GAAGAATATG TAAGACCAGA TGAAGAAAAA TATTCACCTT 
    CATATCACAT GTTGCTTTGA TAACCAAAGT GCATACCATG TTCTAAGCCT 
    ACTCAAAATA TTTGGTCATG CGCCGGATAC AATAGAAGTG ATGTTTTCTG 
    TTATCTATGT TGATAGCTCG TTACTTTAAT GTTGTTCAGC ATTCAATAAG 
    ACTACCATGA AGAAGGAAAA AAATGGTGGT CTTGTCCCCG TTGTAGTACC 
    GATGCTATGT GTTAATGCAA AAGTTGCAAT TTACATTTAT ATATACTTCT 
    TGTATCCTGA AATGTGATTC GTAGGTGTTG TCGTTAAGGA CTGAGATCGA 
    AGACGATAAA ATGTGAGACA AGATGCTTGC CANANATTCN AGATTTAAAA 
    TCAGTTCAAT GACATGATTC AATATCATTC TGCTCANATT AACCGATAN

AT1G72870.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS class)
Computational Description
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class) (TAIR:AT5G48780.2); Has 7950 Blast hits to 7386 proteins in 227 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 7937; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR