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12-3819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22881730 [Map]; Strand: c
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: -10450; Region: intergenic
      • AT1G61900.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 485; Region: intergenic
    Flanking Genome Sequence: 12-3819-1 - 3-prime edge 
    ACAAAGAGAG GCCCACATTG CCCTTATCTA TTCTTAGAGA CTCTATCCCA 
    TTAACTAAAT TATGGGCCTG TTGACCAATG TCTCCATATA CAAATGTTTT 
    TCGATATTTC TAACGGTGTG TATGATTGAA TATTAACNGG TGTGTGACAT 
    AGGTGGGGTT GTCTAGTTGT ATATTGTGGT TCTTTCACAG GAACTAGGAT 
    GAGTGATTGG TGGTTAGCGA GACTCGATGT TTGATCAAGG AGTACAATTT 
    TATGGGTCCA TCTTTGTTAA GCTATCACCA TCAATCTTTG GTAATCTACA 
    AAGTGAAAGT AACCTACCCA TTGAATTTCA AAAACAAACA TCAGAATTGT 
    GAGTCTTGGA AGATCCTTAA AAAAACATGA ATTGTCGTAC TCGTGACATT 
    ATTTCTGTAT CTCAATGCCG AGAAGACTAC TACTATATTG TCTATTTCAA 
    TCATACACTA TGGCAAACAA AAATAGTTCA GAGAAAATAA GCATCTAAAC 
    GGCTGCAAAG ACAGATTCTT AAATTTAGCA TAAAAATTAC TCAAGTAACA 
    CTTTTGAATT ATGAAATCGA CAGTCTATAA ATAAATATAT TATAACCCTT 
    ACGTTATAAA CCCTANAANA CCTTTTCTTT AATTAAAAAG GGTTTTCAGA 
    ATCATNAATC ANTAAGATAA AAAGACTTCC NNAACTTNTA CCTNANNAAN 
    NNTNCNCNNG ACCNGNNNNG TNAACNNNCN ACNTNNNGAN NTNCTGGNAC 
    NANT

AT1G61890.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61900.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR