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12-3894-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22897782 [Map]; Strand: c
      • AT1G61940.1 - [+] show detail - tubby like protein 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3894-1 - 5-prime edge 
    CCTAGATGGG AAGAACAGAG CTGGTGTCTC GACTTTAATG GATGGAGAGA 
    CATTGTTTCT TCCGGAAGAA ACTTTCAGCT AGTAGATGTT CTTAATGGAT 
    TTCGATGCCA ACCTTGCTGG ACAAGGTTCA TCTCGAAAAG AGTAGTAATG 
    ATGGAGTAGC ATATCAGCAA CA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22897898 [Map]; Strand: c
      • AT1G61940.1 - [+] show detail - tubby like protein 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3894-1 - 3-prime edge 
    CATCTAGGCA CTTTGCTCTT AAGAACAAGC ACTCCTTCCT TTTGACCAGA 
    AGAGGACCTG AATGACACAA AATTATCGAG TTCTTTCTGA GTTGGAGCTG 
    TTCTTCCAGG TTCTACTGCT GATGCAGAGA TGGCATCCAT GACACAATGC 
    GTCCTCTTAG GTCCCGTTAT TCTGGTTTGA CACAACAATG ATCACAATTA 
    GCAAAAGCCA CAAAAAGCAA ACCATCTTTT ACTCTCTGTA ACTGTAAGGA 
    ACGAGATAAA TACACCTAGA AACCGAAGAC CAAGATTTTG ACTTTAAGAA 
    GACATAGCTC TGAATT

AT1G61940.1

Model type
Protein coding
Short Description
tubby like protein 4
Curator Summary
Member of TLP family
Computational Description
tubby like protein 4 (TLP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 3 (TAIR:AT2G47900.3); Has 436 Blast hits to 371 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR