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12-3909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11723696 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -2132; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15581; Region: intergenic
    2. Chromosome: 4; Position: 3953623 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3021; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3559; Region: intergenic
    3. Chromosome: 4; Position: 3954691 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -4089; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2491; Region: intergenic
    4. Chromosome: 2; Position: 3615091 [Map]; Strand: w
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    5. Chromosome: 2; Position: 3626334 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron45 (CDS)
    Flanking Genome Sequence: 12-3909-1 - 3-prime edge 
    CTTGNAACAA GGAAACACTA CTTAGGCTTA TAAGANGCCG TNGCGGTTTA 
    AGTGTCTTAT NCTCAATCAT ACACATGAGA TCAAGTCATA TTCGACTCCN 
    AAACACTAAC CAACCTTCTT CTTGCTTCTN AAAGCT

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR