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12-3985-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 277423 [Map]; Strand: w
      • AT5G01730.1 - [+] show detail - SCAR family protein 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3985-1 - 5-prime edge 
    CGGTAGGGTA TATTGGACCG AAATTGAATT AAAAAAAAAA AAAAAAAAAN 
    NNNNNNNAAA NGGGGCCCNA NNNGGGNCNA AANCCCCNAA AAANCCCCCC 
    NGGNAANNNT TTTNAANAAA ANTTNCNCCC CGGGNCNGNN ACCCCCCCNN 
    CCCNNNAAAA AAAAANNNAG NNCCNANANN GNNNCNCNNG ANGNTNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 277307 [Map]; Strand: w
      • AT5G01730.1 - [+] show detail - SCAR family protein 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-3985-1 - 3-prime edge 
    CCCTACCGTT TGAGGAATTT TACTGTAGAG AATGGGACAC TGAAGGTTCC 
    GTGGAATTGA ATTTCGATGC TATATACTCT GAATCTAGAG AAAACCTGAA 
    TCTAGGGTGG TCTCTTTGTT TTTTGCTTAA AAATCTTATT CGGTGTAGTT 
    CAAGTTTCTT GTGTGCTGAT GAGATGATTT TTCTTCTTTT GGTTATCTAA 
    TTCTAATGAA ACCTCTATGT CGCTATGGAA TCAATCCCTT GGCATTTATG 
    TTCTTTTGTC TCTTTTCATA CTAATAAGGT TTGCTGCTGA GGTATTCCAT 
    TGCCTGCATG AGCAACTAAT GACAACTGCA GCACGAGGTC ATGGTTTGGC 
    GATGCGTCTC CAACACCTCG AAGCAGACTT CCCTTCAGTT GAGATACCCA 
    TTCTCTCTCA AACCGATCAT TCTACATTCT TTTATGAGCC AGGCCAGTCA 
    TCTATCTTAC TCTAATGTTT AGTATAAGAG ATATAAGCTG CTATTGGTGA 
    TCCCAAGCAC TGAATTGTTA GTTAGGTCCT CAGGCTTGGA ATGGCATTCT 
    GATCTGCAAA CAAAAGAAGA CTTGATTTCC CCACGGAACT TGCCTCGTTG 
    TATAATGGAT TCGTACGAGG AATGCCATGG TCCGCCGCAG CTTTTCCTTC 
    TCGACAAGTA CATTTCAGTA TATCATGAGA ATTTTCACCA TAAGGAAATA 
    TCCATTTGCA GTTTTTAATC

AT5G01730.1

Model type
Protein coding
Short Description
SCAR family protein 4
Curator Summary
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
Computational Description
SCAR family protein 4 (SCAR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex, chloroplast, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: SCAR homolog 2 (TAIR:AT2G38440.1); Has 1330 Blast hits to 874 proteins in 188 species: Archae - 2; Bacteria - 349; Metazoa - 454; Fungi - 169; Plants - 213; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR