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12-4005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25232152 [Map]; Strand: c
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: 312; Region: intergenic
      • AT1G67350.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -3119; Region: intergenic
    Flanking Genome Sequence: 12-4005-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATCGT 
    GCCTAACTTT TCAACTGACG AAGATCATAC AAAGACCATT CTTCACAATA 
    GTCAGACAAT CATAGATTTC TAAAGGGGAC AATGAAAATG ATATAAGAAG 
    GCAAGATGAT TGAATT

AT1G67340.1

Model type
Protein coding
Short Description
HCP-like superfamily protein with MYND-type zinc finger
Computational Description
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67350.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR