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12-4039-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20458073 [Map]; Strand: w
      • AT1G54860.1 - [+] show detail - Glycoprotein membrane precursor GPI-anchored
        Distance: 0; Region: intron1 (CDS)
      • AT1G54870.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -933; Region: promoter
    Flanking Genome Sequence: 12-4039-1 - 5-prime edge 
    GCTGTTTAGG CCTTGAAGAA GATTATCCTC GGCCTCTACA ACATTCAAAA 
    CACAAAAATA ATGATCTATG AATGAGAAAA ATTCCATCTA CACGATTTAA 
    ATGAACATGC ATGGGGATGA CATTGTAAAT TCCAATATTA TGAGCTTAAA 
    AGTAATTACC AAAGACCTGA ATAAATGTTA TTATACATAT ATTTACAAAA 
    CGATCATCTT GTCGGATTGA AGATTCCCGA CGACACACAA TTCTGCCAGT 
    GAACGGAAAC TCCTATCTCT TCCACTTCCC ACGTGTCTAG AAGCCTGGTT 
    ACCATTGGAT ACGTGTTTCA TGTGCTGTCT GCAACAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20457957 [Map]; Strand: w
      • AT1G54860.1 - [+] show detail - Glycoprotein membrane precursor GPI-anchored
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4039-1 - 3-prime edge 
    TAAACAGCTA CCGAACTGCT CAAAGAGTTC CTCCATTTGC CAAGAATGAG 
    AAGGCTGATT GTGTGGCTGA TGAGATCGCC GACAAGCTCG AAGATCAGCC 
    ATGCACAAAC CACACCACAG CGAGCACGGT TACTCCTGGC TCGGTACCTC 
    CACGGCTGAC GAACTACCAG GACATTCTCT CTGAATGCAA AATCGACCCA 
    AACACTACCC GTGACGGATT GATCTTACCT GTCTGTATCC CTAACCGGAT 
    C

AT1G54860.1

Model type
Protein coding
Short Description
Glycoprotein membrane precursor GPI-anchored
Computational Description
Glycoprotein membrane precursor GPI-anchored; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT3G06035.1); Has 83 Blast hits to 82 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54870.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G05260.1); Has 123768 Blast hits to 123548 proteins in 3620 species: Archae - 996; Bacteria - 80755; Metazoa - 5748; Fungi - 6562; Plants - 2744; Viruses - 5; Other Eukaryotes - 26958 (source: NCBI BLink).
Link
InterPro Scan - TAIR