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12-4116-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3950800 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -198; Region: promoter
    Flanking Genome Sequence: 12-4116-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTTTATTTTT TGACCAGAAT 
    CTGAAATCTT ATGGAGTTTC TTGGTGATGA TTTTGTTTTT GTCAATTTGT 
    AGAGAAAAGC TTTCATGGTG TAGCCAAAGT CCATATGAGT CTTTGGCTTT 
    GTGTCTTCTA ACAAAGAAAC ACTACTTAGG CTTTTAAGAT CGGGTTGCGG 
    TTTAAGTTCT TATACTCAAT CATACACATG CCATCAAGTC ATATTCGACT 
    CCAAAACACT AATCAACCTT CTTCTTGCTT CTCAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22444737 [Map]; Strand: w
      • AT1G60950.1 - [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4116-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCAGGCTAC ATACAAGGTC AAGTTCATCA CACCAGAAGG TGAGCTAGAG 
    GTTGAGTGTG ACGACGACGT CTACGTTCTT GATGCTGCTG AGGAAGCTGG 
    AATCGATTTG CCTTACTCTT GCCGTGCTGG TTCTTGTTCG AGCNTGTGCT 
    TGGTAAAGTT GTGTCTGGAT CTGTTGATCA GTCTGACCAG AGTTTCCTTG 
    ATGATGAACA GATTGGTGAA GGGTTTGTTC TCACTTGTGC TGCTTACCCT 
    ACCTCTGATG TTACCATTGA AACCCACAAA GAAGAAGACA TTGTTTAAGC 
    CTCACCTACT CACCAGCTTT TGATGGTTTA AAAATCATGT CTTTATAATT 
    GAGTTTGTTG TTACAAAACT ATTGTTATCT GTTGTTATTG TTCCTGGTTT 
    GGCTCACCAT CAATCGATGA CATTTTAAAC TATGCAACTG CAAATTCTGC 
    AACACTTTCG ATGAGAATCT AACATTATCG TTTAAACATT GGAAATACAT 
    TTTCTTGAAG TCTAGCTAGC TTTGGTTTGT AGTTCTTATT CTGAACTCAA 
    CAATCATCAA AGTATCAAGA AAAATCCGAT TTGCGAGCAA TTGTGAAATC 
    TTAGATTGAT AAATTCTCTA NAAAGAACTA TACATGTTAT TTGTAGCTAT 
    AGAAGAAACT ATGGAATCTT ATACTCTATT AAGCCCAAAT GGCAAGAGAA 
    GACATGAGTC CAGCTCCTAN GAACAACATT ACATA

AT1G60950.1

Model type
Protein coding
Short Description
2Fe-2S ferredoxin-like superfamily protein
Curator Summary
encodes a major leaf ferredoxin
Computational Description
FED A; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: photosynthetic electron transport chain, response to light stimulus; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 7652 Blast hits to 7650 proteins in 1365 species: Archae - 135; Bacteria - 5670; Metazoa - 7; Fungi - 12; Plants - 625; Viruses - 5; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR