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Mutant Lines
12-4117-1

12-4117-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 22408133 [Map]; Strand: c
- AT1G60860.1 - [+] show detail - ARF-GAP domain 2
  Distance: -356; Region: promoter

GTNATGAACG ACTNNAGCAA TAAGNAACCA GNGACNANCN GTNACTNNGT 
NNAANGNACN GACNTNGNGA NGATCGGCCG CNCNGTGCGA CATAAANCGC 
TGNNNAGANA GGCCNGAGAG CATACGTGCA CCAGACAAAG AATGGTTTGT 
GACTTTGTTG TTGGAAATGG AAAANTTGGA GAGCCTAAAA GCTGAGCAAG 
ATGGATAAAN TCTACTTTTT GAGCTGTTGT TACAACAACA TTTTGAACTT 
ATTAAAGTGG CTTACTTAAA TTTCGTAAGA CATGTGACAT GAGGATGGTT 
TTGTTATCTG ATATTATTTT CCTCTGTTTC TGTAATAAAT AATAAAATGA 
GGGGTTTATT NGNAAACAAC TTTAGTTCCC AGATTTNTCT GTGNCTCTNT 
TCTNGAAGCA AATGAAAACA TNATCAGACA GCNTGAAAAC GCCTCNGAAA 
CTCGCGAGAT CTATTTNCAA ATCGAGGAAN ACAGCNATNC NAGGGNNNAC 
TTGNNTTGNC TTGTNGACTC GNNTAGNAGA NNTNNGGGCN GAANNTANCA 
NNGGGGGGNG GNGANNANNC GNGCCNNNNN GGGGNGNNGG NANGGNAAAN 
NNAANANGNG GGNGATAANA GGNNNNAGNN TAGGNNAGAA GNGGNGAGAA 
ANNNNATNAA ATANGNANAG GAANACNAGA NANAAAAANN GGAGNGGAGG 
GANNATTGAA ANGNG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 16837837 [Map]; Strand: w
  - AT1G44350.1 - [+] show detail - IAA-leucine resistant (ILR)-like gene 6
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-4117-1 - 3-prime edge
```
AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
GTGCATGTAT AGATATCCGT TAGCGAAATC GGGTATTCGG GCTTGGATCG 
GATC
```

AT1G44350.1

Model type: Protein coding
Short Description: IAA-leucine resistant (ILR)-like gene 6
Curator Summary: encodes a protein similar to IAA amino acid conjugate hydrolase.
Computational Description: IAA-leucine resistant (ILR)-like gene 6 (ILL6); FUNCTIONS IN: metallopeptidase activity, IAA-amino acid conjugate hydrolase activity; INVOLVED IN: proteolysis, regulation of systemic acquired resistance, auxin metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: peptidase M20/M25/M40 family protein (TAIR:AT1G51760.1); Has 12322 Blast hits to 12314 proteins in 1908 species: Archae - 129; Bacteria - 9070; Metazoa - 89; Fungi - 234; Plants - 310; Viruses - 0; Other Eukaryotes - 2490 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60860.1

Model type: Protein coding
Short Description: ARF-GAP domain 2
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.
Computational Description: ARF-GAP domain 2 (AGD2); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 4 (TAIR:AT1G10870.1); Has 22643 Blast hits to 15173 proteins in 641 species: Archae - 75; Bacteria - 1664; Metazoa - 11505; Fungi - 2316; Plants - 1355; Viruses - 192; Other Eukaryotes - 5536 (source: NCBI BLink).
Link: InterPro Scan - TAIR