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12-4147-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19497570 [Map]; Strand: c
      • AT1G52347.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 12-4147-1 - 5-prime edge
    TATGAAAGTA TAACATGGCA AGCAAGACAC ATTGTCATGG TAGAACCCAA 
    ATCGTCTATA TTATTAGTAA GTGAATCTTT GGTTACGATT GGTATGTCCT
    TTCAACAGAG TTGAGTTTGT TATCATGACT TGGTTTCAAC AAACATATCT
    TCTGCACTAT AGGGAACCTA ACTTTGATGG TTTGTGTGTG TTTGGTTTAT
    GTGTTTTGGT TTTGTGGAGA AAAAGAAGCA TCAATCTTAA ACATGATCAT
    CTTCTAATAA CAGCTACTGC ATATTATATT ATTAAATCCC AAACAGAGAA
    CAAGAGACTA AGAGCAAAGA GGAAGAACAG AGGATATACA CGATTCTCTT
    ATTCACGAGA CACACAACTT TGTTTATTAG AAAATCTGAA TATGTGTTAC
    AAACAAAGAC ATCATCCTTT TATAGACGTG AAACAGAACT TGACTTAAAC
    AACACAACCA TAAGAGTTAT AACTCTTCAC TTATGCCTCT TAAGATAACT
    ACCCTTAAGG CAACACAACT CTTAATGTAT AAACTTAACA AACATAGTTA
    ATTGTATTAA ACAAGCGACC AAACTCAATT AACCTCTAAC ACTGCAATAC
    CACTAACAAA CATAGTTTAT AATCAGAAGC TAATCCGAAT TTCATTCTAG
    ATTCAAATCA AGTAAGTAGC TTTGGTTGAA TCCAGTCCAN ATGTAAGTAT
    CATTANATAG ATAGAAACAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2309174 [Map]; Strand: w
      • AT4G04600.1 - [+] show detail - transposable element gene
        Distance: 1902; Region: intergenic
      • AT4G04601.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 239; Region: intergenic
    Flanking Genome Sequence: 12-4147-1 - 3-prime edge
    CTTTCATACA CCATGTTGCT ATATATNACA CAAAACCANC TTCAAGTTCC 
    TCAAAACATA CGATCACCAA AACTCACAAT TGTCCTCTTC TTGTATGTGA
    AACAATCAAT CACCAAAAAA CACAACACAA TCCAAATAAT TAGTCTTGTT
    ATTCTTTTTC TACAATCATT TTTTTTTTTT TNCTAAAANC CNNNCTTGNA
    AAAANCNCCC NNGGGGNATA NNATTTTTTT TTTTAAAAAA NNAAANCCNT
    NTTNTTNAAA ATTTTTTTTT TTTNNCCCAA NNCNNGGGNN NANNCCCNNG
    GNAAAANNTT NCCCCNGGGG GGGGGCTTTA ANCNNNNNTN TNCCCNANNN
    CTTTNTTNGN NAAAATTTTT NTTNNTANNA ANNNGGGGGG NCNNAAAAAA
    AANANNTGGG TTTTACANTN NGNNAAACGN NTTGNGNANN ANCCNAAAAC
    NTTTAAAANC AANANNAAAT TANGCNNAAA NTCCNTTNGT GTTAAGNNNG
    GGGNATNTAN CATTTTNGNT TNGGGGTNNN ANNNNGGGNN GNCAAATTTA
    TTAAANNNGC CTTNANTNGN ACCNNNATTN TNTNGNAANA AAGGGTNATT
    GNNGNNCNCC AGCTCACCNT CTTTNNNGGT GTACAAAAAC NNNNGCGCNN
    NCTTTTTACA GGANNNNNNA TNNTTTGANG NCNGNCCAAA ANNNTAAATA
    NCGGNTTCCN TNNNANANTT CCATTNNTNG GNNAAAAANA ACGNANA

AT1G52347.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT4G04600.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G04601.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR