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12-4149-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19597548 [Map]; Strand: c
      • AT3G52870.1 - [+] show detail - IQ calmodulin-binding motif family protein
        Distance: -1726; Region: intergenic
      • AT3G52880.1 - [+] show detail - monodehydroascorbate reductase 1
        Distance: 3664; Region: intergenic
    Flanking Genome Sequence: 12-4149-1 - 5-prime edge 
    TATGTCGCTT ACTATAACTG GTCNGTCANG NATNTTNNCA TCCTANTNTN 
    ATTNCTGNNG GCGNGNTACC AGCTNTNGGN CTCNTCCNAN TCANGANGGN 
    GAAACCAATT TTATAACATA TGGACTTTGA GTCTTTAACA GCTTAAACTA 
    CGCTNCCTTT TAAATAATGT NNTCGNNAGA CTTTGACACA TTNAAATNNA 
    AANCTATATA CATAAATTTG AATAGGNGAN TATNATNANA TNATTNTTTT 
    GTGTNNGCTA NATTAATGAT CGACNAGAAA ANGANGCGTA GGGNAAAATA 
    ACAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8897094 [Map]; Strand: w
      • AT1G25360.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 294; Region: intergenic
      • AT1G25370.1 - [+] show detail - Protein of unknown function (DUF1639)
        Distance: 661; Region: intergenic
    Flanking Genome Sequence: 12-4149-1 - 3-prime edge 
    CAAGAAATAA AGAAAGAAGA CGTTCGACTT GGTAAGAATG AAGAAATATA 
    TAACCTGAAA GTCAGATC

AT1G25360.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 48992 Blast hits to 14461 proteins in 282 species: Archae - 2; Bacteria - 7; Metazoa - 148; Fungi - 100; Plants - 48130; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25370.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1639)
Computational Description
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G68340.1); Has 265 Blast hits to 265 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52870.1

Model type
Protein coding
Short Description
IQ calmodulin-binding motif family protein
Computational Description
IQ calmodulin-binding motif family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 341 Blast hits to 277 proteins in 58 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 100; Plants - 209; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52880.1

Model type
Protein coding
Short Description
monodehydroascorbate reductase 1
Curator Summary
Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2
Computational Description
monodehydroascorbate reductase 1 (MDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, apoplast, chloroplast, peroxisome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31553 Blast hits to 31492 proteins in 3048 species: Archae - 709; Bacteria - 24685; Metazoa - 865; Fungi - 647; Plants - 730; Viruses - 0; Other Eukaryotes - 3917 (source: NCBI BLink).
Link
InterPro Scan - TAIR