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12-4155-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11110946 [Map]; Strand: w
      • AT4G20720.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: 2893; Region: intergenic
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 817; Region: intergenic
    Flanking Genome Sequence: 12-4155-1 - 5-prime edge 
    CAGCTCACCA CGGGGCCGAT TTCCCGACAA ATCACAGGGA ATCTCGTAAG 
    GGTTAATACA TCTACGGATC GCCCAGAGAG TCGTCTTTTC GGAGAAGTTG 
    ACCTCGCCTT AATCGAAGAT ATATGCNTGA GAGATATAAA CGTTTACCTC 
    AAGCAAGTGC AACCAGTCAT GAGACCCAAC TCTATAAAAC CAGTCAGCTT 
    CGGGATCGTT TTCCTTGAAA ATCCTGATGA ACTAGGAGTG ATATACCTAT 
    CTACAGATCG CCCCAAGAGT CAGCTTTCTA AAGAAGCCGA CCTCGCCTCG 
    ATCCGAGCTG TCTATTAGGA GTTATCATCA CTTCTCTGCA CTAGACACAA 
    TTTCCCTGAC AAATCCGCAG CTGTCGGAAC AGCCAACTTA CGAATCAAAC 
    TCCAAGCGAC CTAGAAAGAA ACAAGATACA ATCTACGCGA CAACGGAAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 57546 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -9196; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 1159; Region: intergenic
    Flanking Genome Sequence: 12-4155-1 - 3-prime edge 
    GTGAGCTGGA TTATTCAGAC GGATTCGTAG TTCTAAAGAT CGCATCTTCT 
    GGATAGAAGC AGGGATAACA TTCGATAGAC AGCTCCGATG GAAGTGAGGT 
    CAGCTTCTAG GGACACCTGA CTCGCTGGAA AATCCATAGA TGTGCTACTA 
    GTTTCGAGAA TCGTTGAGAC TTGTGGGGGA ATTGATCCCT AAGATGACTA 
    GTCTTCTTAA GAAAGGATTC TATGTCAAAC GAGATTGCAT CCTCTGCAGA 
    AACATGGAGA TAATTCTCGG ATGAGATATC GGATCGAAGG CTAGTTAGAT 
    TCCCTGGAAA GCTAACAACC GGGGCAATCC GTGAACATAT TATTCGATGC 
    AAGAGTCGTT GCGACATATC GGGAAATCGG TCCTGAGGTT GACTGGTCTA 
    TTCAGACGGA TCTGTGTTGA AACAGACAGC ATCGGCTTTA CAAATACGGT 
    GATAACTCTC AGAATAGATA TCCGATTGAA CCATGGTTAG ACTCCCTGGA 
    AAGCTGATCT CCGGGGAAAT CCGGGAACAC GTTACACGTC ACACCCGGTT 
    CATTGGAACC TGACGGGAAA TCGCCGAGCA AATAAACGGA TTGGATTATC 
    TTGGCTTGAT GAGCGTTCAC CGAAAACTTG GATGAGTAAT ATGCGAAGAG 
    AGTTGTTTGT GTCCCCCTAC CTGGCGCGCC AATTGNTGAT TCTGAAAATC 
    ACACAATAAA TTTGTTTAAA GGGGGTAACC AATTTACTTA

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G20720.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT1G05090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR