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12-4201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 844418 [Map]; Strand: c
      • AT1G03400.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -228; Region: promoter
    Flanking Genome Sequence: 12-4201-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTAC TTGAATGATT AACCAAAAGC ATATGATTTT 
    AGGTTTTTTA AAACCTTGGT GGACTAGTCC ACGTTCGGTT GACTGATTTG 
    GATATACATA TACATATATA TATATATATA TGAAAATAAC CAAATTAATA 
    TTANATGNGG GTGAGATATA CNNACATCAT TTTCTTTANG AGGNGGCAAT 
    NTCTCTTGTT ATCTGANNGA NACAAATTTA GTTAGGGACG TAGAAANGCA 
    AAAACACAAC ACAAAAAAAA NACCAANAAG CAGNGGAGTC AACTGATCGT 
    TCAAGTCAAG CAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 844416 [Map]; Strand: c
      • AT1G03400.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 12-4201-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACTCGAC CGTTACCGAC CGTTTTCATC 
    AATCAAGTTT ACAAGAATAT CTGATGAACA TATAATTAAA CGATATATCA 
    TCGGTGGATG ATGATGATAA ATGAGGCCAA TAAGCT

AT1G03400.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1); Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0; Bacteria - 1123; Metazoa - 116; Fungi - 839; Plants - 4847; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR