Home
Mutant Lines
12-4205-1

12-4205-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 359578 [Map]; Strand: w
  - AT3G02065.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT3G02065.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT3G02065.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 12-4205-1 - 3-prime edge
```
CATCTGGATA GGAGTAGGAA AGTCATAGCC AGCCGTTTCT AAGTTGAGAA 
GAAGCT
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 359694 [Map]; Strand: w
- AT3G02065.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT3G02065.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT3G02065.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon2 (CDS)

TCCAGATGCA AGCAATTCCA GCTGCTTTAA CCGGCAAAAG TCTGCTCGCC 
TCAGCCGACA CCGGCTCTGG GAAAACAGCT TCTTTTCTTG TTCCTATTAT 
TTCTCGTTGC ACAACNGTAT CACTCTGAGC ATCCCTCAGA CCAGAGGAGG 
AACCCCTTGG CTATGGTTTT GGCTCCAACG AGAGAGCTCT GTGTCCAAGT 
TGAAGATCAG GCAAAAATGC TCGGAAAGGG ACTGCCATTT AAGACTGCAC 
TCGTTGTAGG TGGTGATCCC ATGTCTGGAC AACTCTACCG CATTCAGCAA 
GGTGTTGAAT TGATCATTGG TACCCCAGGC CGGGTGGTGG ACCTTCTATC 
AAAGCACACC ATTGAACTAG ATAACATCAT GACGTTTGTG CTGGATGAAG 
TTGACTGCAT GCTTCAGAGA GGCTTCAGAG ATCAGGTGAT GCAGATATTT 
CAGGCCTTGT CACAACCACA GGTCTTGCTG TTCTCTGCGA CGATCTCAAG 
AGAGGTGGAG AAGGTGGGAG GGTCTCTAGC CAANGAAATC ATTTTGGTAT 
CCATAGGTAA TCCCAACAAG CCTAACAAGG CTGTCAACCA ATTGGCCATC 
NGGGTAGATG CAAAGCAAAA GAAACAGAAA NCTGTTTTGA TATACTCNNA 
ANTCAAAACC ATTTCAAGCC CCCCGCTNTT NGTTTNTGGN GAGTNNGAAA 
GTTGGACANA N

AT3G02065.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 40669 Blast hits to 40162 proteins in 3004 species: Archae - 589; Bacteria - 20482; Metazoa - 5880; Fungi - 4585; Plants - 2539; Viruses - 12; Other Eukaryotes - 6582 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02065.2

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G02065.3

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR