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12-4208-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 69001 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 3522; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 272; Region: intergenic
    Flanking Genome Sequence: 12-4208-1 - 5-prime edge 
    TTGGCCGAGT TATAATCACT AAGAGACTTC TGTATTTTAG AGTGTCATTC 
    GATCATCATA ATGTGTTTTT TTTTTTTNCC CTTTGGGGAA AAANAAAAAT 
    TTNNNNNNNT TTTNNNTTGG GNNCAAACCC CCCNAAAAAC CTAAAANCNN 
    NTNAAANNAN NNNCCAAAAA NNNAAAANNN NCTTTCCNCC CNAAANGNCA 
    NGGGGTTCCN CCNANGGGGN NAANCCCNAN NGGGNGGGNA AANCCCCNNT 
    CCCAANCCCG GNAACCCGGN AANTTNGGGG GNNGNCCCCA AACCCNAAAA 
    NCTAAANTTC CCCCCCGGGG CNGGNANCCC CCCGGNCCCN NNNGGGGGGG 
    NNTTNNNNNN AAAANGGGGG NGTNTTNTTN NCCCCCCCCC CCCCCNCCCC 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 69118 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 3639; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 155; Region: intergenic
    Flanking Genome Sequence: 12-4208-1 - 3-prime edge 
    TCGGCCAAAC AATGCACTGT GCATCGTGCA GTTCAATAAC CACATTTTCA 
    GTCAAAGAAA ACCCAATAAA ATCAATTAGA TGGAAATAGC AGGGGCTCAT 
    TGGGAGAATT TAGCTCATTT CCTAAGTTCT TCTTCACTTG TTACAAGTTC 
    TCTGAATCAT GGATTCGATA GATCTGGTTA TCATTCATCA ATTATTTGGT 
    TACGTGATTT TAAGACAAAG ATTTAGGACT GTATTATTCA AATGAACCAA 
    AACATAACTC TTTTTTCTGA AAATATTGCA TAAACGAATA CAATAATACA 
    AGGCACTATC TCTGAGTCTC GGAACGTTCT TTCTTTGATT AAGGGAGACA 
    GAGCACACAT AATAATATCA GCAGACGAAT CCCTGAGGAA CATTTTTGCC 
    GCAAGAGTTG AGAAGCAGAG TGAGAGCAAC GGGAATTTTG ACAGGAGCAA 
    CTCCGAGAAT GCTGGTTTTA AGTGCAGTGC ACAGACAAAC GGCAGCTTCA 
    AAGTCAGCCA AACCTTTGAT GAGCGAGCAA CACTCCTGGC TCGGTGGTGT 
    ACCGATGACC TCACTAACCA GACCTAACCA GCTCCCACAC ACTCCAAATT 
    TGAGTGTGTC TCTTGGACAT TTCGTGGTGG CTTGTTTTGC GGGAGGGGGA 
    GGGCATGGCT TGACGGTGGC TCCTGGTGTA ACATGGCCGA AGAAGAATGT 
    TNTGTTAAGG AGCANCAGAT GAGAAGAGAT CGCAAAGCTA CC

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR