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12-4232-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702080 [Map]; Strand: w
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -334; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -418; Region: promoter
    Flanking Genome Sequence: 12-4232-1 - 5-prime edge
    CTTTNAAAAA CTANCAAAAT CGGTTATACG ATAACGGTCG GTAAAAATTT 
    TTAAATTTTT AAATTTCAAT ATCATGAGCT GGAAGCCAAT TCGGCATTTA
    GGGGAAGCTG ACGCAAATTT CCGGTAAGAA GATCCGGTCT AAAATAGTGT
    TTCCGGTGAT CAGGATTTGT CACTCCCGCT GACAATAATA TCTGATAGCT
    TTTCATATTA ACCCCTAAAG AATGTTTGAT ATCCGATATT AATCCCAAAT
    TTTGTTTCAT ACTATTTTCA TCCACCAGAT TCAGATCCAT ATAAAAAGTT
    TTGTGACTCA TTTACCTAAT TCAAAAAACG TTTTCCGTAA GGCCCATTTA
    CATGCTAACT TTGGGCCTAT ATGCCTAGGT TTTGGTCGAT TTTTGAAATC
    AAGGAAACCC TTATTATTCC TTCCTTGATA AAGAAGAATC TTCGTTATTG
    CCCTATTGAC GTCCAAAGCC AGATCTTCCA TACGCCGCCA TGAACGGCGA
    AAAACCACTC CGTGAGAGGA AGAANAAGAT GCCGTATCCT TCTCCGGTGA
    CAGAAGAACC AATCTCTATC ATGTCACTTC CTTATGACTT GTTATTGAAC
    TGCTTCTCAC TCGTCTCAAG GTTGTATTAT CCAACTCTCT CCCTCGTTTC
    CAAAACTTTT CGATCTATCA TTACTTCACG CGAACTTTAC GAGATCCGAT
    CACGCTTAAA CCGTACGGAT AAGTGTCTCT ATCTTTGCTT CCCTTACGAC
    ATGAACACGC ATTGGTTCAC TCTCTGCCGG GAACCTA

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR