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Mutant Lines
12-4296-1

12-4296-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 18190543 [Map]; Strand: w
- AT4G39040.2 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G39040.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
  Distance: 0; Region: exon1 (5UTR)

GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCACC AAACACTCTC TAACTTTGGT TTCTGGTTTC 
TTTTTATTAT AATAAACCCT TTCAAATATG ATTATTTCAC AATTAAGACC 
CTAAATGTTT GATTATTTAG AAAGTAATCT CACCTAAGTA TCTCACGGTT 
CAGATTGCNG CCGTGGTTGT TTTGGGTCGT TGTATAATGG GCCAAATTAG 
GCCCAATTCG ACCCATTTAA AAAATGATAT TCTCTCCTTC TTTTTTGTTG 
GTGGGTCACT CAACAATGAC ATTCTCTACT GTTTTGCACA CGCTTTCCTG 
CTAAAACAAA TTAAAATTGG TACGGACCGA CACAAATCAG AGATTGATGA 
CGAATTTTTA TAAAACATAA TTTAATATTT GATAGATTGT CTTTTTCTAG 
CCTTATTAAT TTCCATTTCA GGTATGTTTA AGCTAGTAAT TNACTAACAC 
CACCTTTTTT TTTGGCTTTN ACNAANNCCN CGTATGGNNN AATTTNCTCT 
TTAATTGGNA CATTNNCAAN CAGGGGAATT NAAANATCNC CCCACGGGGC 
NNGNGAAAAA AAAAAANCNT CCCCGGNGAG CNANCNGGGC ANAANGCTAA 
AAAGGGCNTT TGAAACTNCT NANCTTCNAA AAACAGGNNC TTTTTTTTNA 
TNNAAAAACG GGATTNNTTN CNTCAAAANN NTTTNNGNGN ANTAAATTAA 
NAAATNAGAG GGGGGNAGA

3 prime edge [+] show sequence

Chromosome: 4; Position: 36761 [Map]; Strand: c
- AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: 0; Region: exon10 (3UTR)
- AT4G00100.1 - [+] show detail - ribosomal protein S13A
  Distance: -323; Region: promoter

NTNCNGNNNT TTNNNNNGCN ATTTGNNNNN GNTGNCAGTC TTTTACTNGA 
CCGTTACCGA CCGTTTTCAT CCCCTACAAC ACTCACAGTC TTNTATGTTT 
TCCAAATTAA GGAAATTTAA AAAGCACACA ACANCACTAA GAAATATGAA 
TCGATTAAAA TTATTATACG CATTTTGNCT TCTTTGTATN AGAAAAATGA 
TAGTACTACA TACNTATGGT AATTTGGTAA ATAATACAAA AAGAATCTAC 
ACANCCAANT GAAAAATCAA AAATGTGTCT GGTCGTGGAC TCCGATGGGN 
TTTTTGAGGC ANATTGAANA CTGGGCCNGA AATATGAAAG GCCCACGTAN 
GTCCNGAATA TAACCTAAAA AGCACACTCT NTAATAACAN CCANAATTAN 
GGTTNCCTCT CTTGNCTCNA NNAGTCANTG CGCATCCCGT AGGANAANAG 
TNNNAGNAAT NTNNCNNCAT GGGNCNGATG TACAGTCNAG GGNTTNNCNC 
NCNNTNTNNN NNNTNGTTNA CATTNTAGNT NACGTGCNAT TTGAANAGAN 
NTAACTTNNA GAANACTCAT TNNGTANCGA NNNNGGCNAT NCGAGNCCNT 
NGNNGTCGAC TTTTCAAGTA CNANNACCNN TCAGACCNCA CNCANCANNA 
CNCNNGCANA NAGNTNAGNC NNCNANNCTN TCNCTCATTN GTNNNNATNT 
NCNNNNCATC AANNTNAGTA NNNCGCNTNN CNGANNNANN ACAACTTAAC 
NACNTTTGNN TANGNTNTNA AAAAANANAN TACCNTNTTN NGNCNCNAAA 
GNANNNCGAT CGNCCNANCA CAAAN

AT4G00090.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00100.1

Model type: Protein coding
Short Description: ribosomal protein S13A
Curator Summary: Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description: ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39040.1

Model type: Protein coding
Short Description: RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description: RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39040.2

Model type: Protein coding
Short Description: RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description: RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink).
Link: InterPro Scan - TAIR