1. Home
  2. Mutant Lines
  3. 12-4372-1

12-4372-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • desaturated green (PATO:0001272)
    (Seedling::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23911429 [Map]; Strand: w
      • AT1G64390.1 - [+] show detail - glycosyl hydrolase 9C2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4372-1 - 5-prime edge 
    GTTACTGCTT CTTCTCTGTT TTCCGGTAGC TTTCTCCGGT CATGATTATG 
    GTCAAGCTCT TTCCAAGAGT CTTCTCTTCT TCGAAGCTCA GAGATCTGGT 
    GTTCTTCCTC GTAACCAGAG AGTCACTTGG CGCTCTCACT CCGGTCTCAC 
    CGATGGCAAA TCAAGCGGCG TATGTCTCTC CCTCTCTCTC TCTCTCTCTT 
    TNTAGATTTT GTTTCCGACA TTGTTGCTCT GTTTTCCACC TGATTTTGAG 
    TTTATTCANA CAACATTTCA GTAAATTAGC TATAGATCTG TTTTCCGTTC 
    AGACAACGTC GTCACCAACA CTGTNCGTGT TTCATACAGT ACTAACTAGA 
    ATCTTTTGTG TTGATCAGGN GAATCTGGTC GGAGGTTACT ACGACGCCGG 
    AGACAATGTG AAATTTGGAT TACCGANGGC TTTTACGGNG ACGANGATGG 
    CGTGGAGTGT GATTGAGTAC GGGAATCAAT TACAAGCCAA CGGCGAGCTT 
    GGAAACTCCA TTGACGCCAT TAAATGGGGT ACTGATTATT TCATCAAAGC 
    CCATCCTGAG CCCAACGTNC TTTANGGCGA GGTNNAATAC TGACTATATT 
    NNAATNAATA AANACTATNN AANNTATNAA NACTGGNAAN NAANGATNAC 
    AAAANCNGAA ATNGAGTNNN NGANGATNNN AAANNNANTN NNGGGNATNT 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23911313 [Map]; Strand: w
      • AT1G64390.1 - [+] show detail - glycosyl hydrolase 9C2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-4372-1 - 3-prime edge 
    GCAGTAACAG AGCAGCGACA GGCGCAAATT TCTCCATGGC TAAAAAAAAG 
    AGAGAGAGAG AAATGCCGGA GAGAGGATCA GCTAAAAAGC GCTGATATAG 
    GGAGACCAGA GAGTGAGGAA AGTGGCCGGA GAAGGAGAGA GGAAGAAGAA 
    GAAGATGGAT TGGTGATTTG TGAAGACGAA GAG

AT1G64390.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9C2
Computational Description
glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR