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12-4465-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 229749 [Map]; Strand: c
      • AT5G01595.1 - [+] show detail - other RNA
        Distance: 0; Region: exon3 (NonCoding)
      • AT5G01600.1 - [+] show detail - ferretin 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-4465-1 - 5-prime edge 
    AATATCCTCA CGTTCACACT ATCCCATTGG ATGTAGCACG AGGCCGCCAC 
    ACGCCCCTAC ATCTGGCTTT CATATCCACC CTCCACGTGG ATCTCAATCC 
    AACGGTGACC ACACGCCTTT TCCCTCTTAT ATAAACCCTT CCTCCTTCGT 
    CTTTCTTATC ATCATCACCA TCTCTTACAA CAAATCTCAG GCGGCTCAAC 
    ACTATCCTCT TCTACATTTT CCAACGATGG CCTCAAACGC ACTCTCGTCT 
    TTCACCGCCG CTAATCCCGC TCTGTCTCCT AAGCCACTAC TCCCTCACGG 
    CTCTGCTTCT CCGTCGGTTT CTCTCGGCTT CTCCAGGAAA GTTGGCGGCG 
    GCAGAGCAGT GGTCGTTGCA GCGGCTACGG TGGACACAAA CAACATGCCG 
    ATGACCGGAG TCGTGTTCCA GCCTTTCGAA GAGGTGAAGA AAGCCGATCT 
    GGCCATTCCA ATCACATCTC ATGCCTCTCT CGCTCGCCAG AGGTTTGCCG 
    ACGCTAGCGA GGCAGTCATT AATGAGCAAA TCAAGTAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 229865 [Map]; Strand: c
      • AT5G01595.1 - [+] show detail - other RNA
        Distance: 0; Region: exon3 (NonCoding)
      • AT5G01600.1 - [+] show detail - ferretin 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-4465-1 - 3-prime edge 
    AGGATATTCG ATCCACGTTA ACATCTCTCC AAATAAAGTT TGTCTGTTTC 
    TCTGCTTTCT CTTTTATCCT CAGAATCTTT TTACCATTTC CGGTTCCTAC 
    TCTCGCGTTG CCACTTTCTT ATTTCCTACT CGCTCTCTCC TATTTTTCGA 
    AATGTATTTT TTAGAGTTGT AGATGATAAC AAATACAATT GTTTACTATA 
    AAAAAAAAGA AGAAAAGATG ATAGCGTTTC CAACATAAGT TANACGTGTA 
    AAATCCTGTG ACACATATTG CCATAGGAAA TAGGATAGAG ATAAAAGTAT 
    TTCCATATTG TTTTTATAAA AAATCATCAA GCTACTANAA CATAANATTG 
    ANAATGGTCC AAACCCTTTA ANACTTTCCG TATTATGTGG CCTAATATTC 
    ATAATTTACA ACAAAGAAGG AAAAATTCTN GGCTCTCTAG GATATTTGAT 
    GGANACGGAA AACTGATNTA CAATTATACA TAGGATAGAG TCGCGAGTAG 
    CTCAACTCCA CGTAATTTCC AGCCTAAAGC GCGTGAGAGG TTCCAAATGG 
    TTCCTTGTCT TTATCGGAGA CAATTACACG TCGGAGTAAG TACATTGNGG 
    GCCTCATTAG TAATGTCACG GNCCAAGTTA AAAAATCATA TCAAAAGGTT 
    TTTTTTTTAA AGGNGGAAGN GGGGGGNGGG GCCCNNTTTA NCCTTTAAAN 
    AANGGGGNGN NGNGGGNGGG GTTTTNTTTN ATGGGCNGGN ATNNAA

AT5G01595.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01600
Link
InterPro Scan - TAIR

AT5G01600.1

Model type
Protein coding
Short Description
ferretin 1
Curator Summary
Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational Description
ferretin 1 (FER1); FUNCTIONS IN: ferric iron binding, iron ion binding; INVOLVED IN: in 12 processes; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin/Dps protein (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ferritin 4 (TAIR:AT2G40300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR