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Mutant Lines
12-4485-1

12-4485-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 3511385 [Map]; Strand: w
- AT3G11200.2 - [+] show detail - alfin-like 2
  Distance: -833; Region: promoter
- AT3G11200.1 - [+] show detail - alfin-like 2
  Distance: -758; Region: promoter
- AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
  Distance: 0; Region: intron5 (CDS)

TCTGTAACAA ACCAGACTAT ACCGTTAAAA CATTTCAATG AACATCGTCG 
ATACTCCATT CCCGGTTATC GCATTTGGAA ACTCTGAGAA AGTCATATAT 
ATCAAAGGTC TCTCTATATT TCTTCAGAAC TCAAAAAATA CTTACGTGAA 
GCAAACAGTT TTCCAGTCAT CTGCTTTCTG AAAAGTAGAG AAGAGATCAA 
CTACTTCTAG GCCGAGTTCT TGGCACAGCT CTACACAAGC ATCTGAATAA 
GTCTTGCAGA GGTCGTTTGT GCGGATTACC TCGCTCAAGT ATGGGCTTGT 
GAGAGAAAAA GAAGCACATC TATATTAATA AGGCCGGAGA GAATAAGGAG 
AAACAGAGAG ATAGTGAAGA AATTCAGGGA AGTTACCTTT GGTTCTGGCG 
AACTTTAGCC TCATCCACTG GAGGAGAACT AAGAAATATG ATTCGGGTGA 
AGTCTGAAAG GCTCTGAAAC AGAAAATAGA GGAAGAAATT AGCACTTGAA 
ATGGCTTTTA AACGTGACTG ACAGGAGATA AATAATAAAT CTAACAATTA 
TAAAGGAAGT ATAAACCTGA AGATGAAGAG CGATCTTCTT CATGTTATCA 
ACATATTCAG TAAGTGGTAC ATGAGGTCCT AGTCCAGACG AGTGAGGCGC 
CATTGAGTCG TTTCCTNCCA AATAGACAAT GACCANAGAA GGTTGTACTG 
CAGCNTC

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 3511269 [Map]; Strand: w
  - AT3G11200.2 - [+] show detail - alfin-like 2
    Distance: -717; Region: promoter
  - AT3G11200.1 - [+] show detail - alfin-like 2
    Distance: -642; Region: promoter
  - AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
    Distance: 0; Region: exon6 (CDS)
Flanking Genome Sequence: 12-4485-1 - 3-prime edge
```
GTTACAGAGA CGGGATTCAT TTGTCAGCAC AAGGAAGCAA AATAGTAGCG 
GGAGAGATAC TAAGAGTGGT TAAAGAAGCG GAATGGCATC CATCACTTCA 
CTGGAAATCA ATGCCAACAG AATT
```

AT3G11200.1

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11200.2

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11210.1

Model type: Protein coding
Short Description: SGNH hydrolase-type esterase superfamily protein
Computational Description: SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR