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12-4509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 433555 [Map]; Strand: w
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-4509-1 - 5-prime edge 
    GGTACTAGAG GACATTCTTG TGACTGTGGT CGTGTCTTCT CCAGGTATAA 
    TTTCTTGTTC CTCTCTATCA TTTGATTTTT TTTTGACCCA TTTTATAAAT 
    TAATTATTGG TATTAATAAT TCTGAAAAGA TATGCAAACT TTTGGAAGGA 
    TTTGTTAAGT ATTTCTAAAA TATACAAGTA ATTTGACTCT GTTTGTTTTG 
    TATATTTAGG AGATCATATA GAAAGACAAA TATAGAAAAT TCTTCTAGGG 
    ACCAAAGACT AAGATTGATA GTTATAGTAC TATTTGATTT GACTATCCTT 
    CATGATTTTT ACTAATTCTG TGTATTGATG TGTATGCATC ANAGTTTTTT 
    AATATATCTC TTGACTATTT GTTNGGTTTT TGNGACATAA AAAGAAAGTT 
    AAGCACTTAA ATTAATGACA TTGACCCCAA TCTCTAAANA AATATTTTAT 
    GTATTTAGGT TATTATTGGA CCTTTTTTTC GACACAAAGG TTATAATNGG 
    ACCTAAACTC ATATTAATAA TATATATTTT TGAGTTCAAA GGTATTTAAT 
    AAACGACGTT TAAACAGAAA AACTTAATAT AAAATTATTA ACTTTGNCAC 
    ATTTTCATAA TCCTACGTCA TATAAATTAT GTAATNGATA GGTTNCTTTT 
    CTTCTTTTAG GGNGGAAAGT TTTATTGAAC ATCAANATAA TNGGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 433440 [Map]; Strand: w
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4509-1 - 3-prime edge 
    CTTAGTACCA CAAGTTTTGA GATGAGCTTT GTAATCAGAT TGAACAGCAT 
    AACCTTTAGA GCATCTCTCA CAAACCCATT GCTTATGGTT ACTATGTTTT 
    CTTCTGAAAT GTTTTTTGAT GCCGACAAGA TCTCCCAGAG CATGACAAGG 
    ATTATGGTGA AGGCAAGTGG GTTCAGGGCA AACATAGACT CGTTTCTTCA 
    CCTCTATGTT GTTGTCTCTT TTAAGAAGCT

AT2G01940.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.3

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR