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12-4523-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 89461 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: 12-4523-1 - 3-prime edge 
    GGTACTTTTG AGATTTTAAG AAACTCACTT TGTTCTGTAT TAGCTCGTCA 
    AGCTCTTTCT TCAAGGTTTG GTATATCTCT GCAACATCAG GTTTCATGAA 
    AAACTCCAAG TATCCTCCCA ACATTTTCAG GTGGCCATCC TGCCAAAAAG 
    CCCAAAAACA AAAGTTGACA ATGAAATTGC TGTCAATCCT GATAACAAAA 
    ACAAGAGTAC AAGCAAGTCC AACAGAGAAA AAAGGCTCAC AGTGTCTCCT 
    TTGGAGATGC TACCGCCAAA GAGGATAAGA GTAGAGTCAG AGCAGGCTGT 
    CGAATCCCTC AAGAAAACGG AGTTCACTTT TATCTTCTCG TTGAAAACCA 
    ACCACGGATA TGGTATTTTT GTCTCCCTTG CATTTTCAGA ATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 89345 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron18 (CDS)
    Flanking Genome Sequence: 12-4523-1 - 5-prime edge 
    AAAGTACCCA CCTTTGTTGT TTTCATTCTG TCAGGTATTT CTACTGTGAT 
    ATCAGATCTC GTTAGGCAAT GGACATCTGA GTTATGATAC TTTTTAAAAA 
    CATTCCAGCT ACTTAATCCT AAAGTGGATA TGCAAGCACA CCGTGAACTC 
    TTATCAGCTA TACGGTTGTT GGTCTCTGAG GATGGATGTG ATGGAAGATT 
    TGTGTTTGGT CACCAAATAC TTAGGCCTTT GGAAATATCG GCGTTGTCAA 
    CAAAACCGTC ATTGTTTTCA AGGACCGAAA GTGGGCCGGG GGGTGACAAT 
    TCCAAAAGTC AGCTCCAAAC AATACTCACG AGGGCTGGTT ATACAGTACC 
    GATGTATAAG ACTAAGCAGT TGAAGAACAA CAAGTTCCAA ACAACAGTAG 
    AGTTTAACGA GACACAGATC ATGGGACAGC CTTGCAGCAA CAAGAAGAGT 
    GCTGAGAAGG ATGCGGCAGC TGAAGCTATA CAATGGCTGA AGGGAGGGGC 
    TAAGGAAAGT CATGAGCAGG TGAATCATAT GTCAAAGCTG CTGAAGAAAA 
    GCAAGAAAGA TCACCTCTGA TTGAGACCAA TGCAGAAAGT GATACAGTCA 
    GTGGGCTTCA AGGCTCAAAG GCTCTATTAG AATAGGGGAG TGGGAGGAGC 
    TCCATCAACA AATTCCTCAA GGTCTTGTAA TTATCGGNCT TATTATCTAT 
    GAAAAC

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR