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12-4585-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4737810 [Map]; Strand: w
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4585-1 - 5-prime edge 
    GTCCCACAAG GCGTTGTCAA GGTATGCCAT CAGATCGTCT GACTCATCAG 
    AGTTTGGTTT GAGCTTCTTG GCTGCATTGG TTTCTTCAAC AAATGATGCT 
    TCGTTGTTAT TGACAAGCAT TGAAGAGATC TCGGGTGTTT TAGGGCCGTG 
    ATCACTCCAC CCGAACTCAG AACAGTCGAA GGAGTTACNT GCCCTGATCG 
    GAACTGAAAT ACTGGTATCC ATTGTTACCT CCAGCATCGA ACGAGTTTGT 
    TAACCCAAAC TGATTGTTGT ACATCTGAGG CTTCTCTTCC ATGAAACTCA 
    TATCACCAAA AGAGTTGTCA AAGGAGTTGT TGCAGTACTG CTGACTCAGA 
    TGTGTTGGCT GCTGAACCAA AGTTACGCTT TTGTTTGGTT TAGCCACTGA 
    TTTCTGAAGA TTATTAGTCT TAGCACTAGG ACGTTTCTGG GATACGACGC 
    TAGGGTTCTT CTCCTCGGGA AAATTCACCT TAGCTTTCGT GCCACGGATT 
    CTGCGTGCTG CAGCATCATA AGCTCTTGCT GCTTCCTCAG CAGTGTCGAA 
    TGTTCCAAGC CATTCTCGGG AGCCTTTTCT CGGATCACGG ATCTCCGCAG 
    CCCATTTTCC CCAAGGACGC TGCCTAATCC CTCGGGTATT GATTCTTCCT 
    CTTCCTCTTA AAANATTTCT CANCTTGCTC AGCGGACTCT ACAGTTTTCT 
    TGGCATATGC TGAACCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4737694 [Map]; Strand: w
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4585-1 - 3-prime edge 
    TGTGGGACAC CCCACTAGAA GTGGAAGCCA TGCTTGGCGC AGATGCTGGT 
    GCTGTGACTC AGGAAGAGGA AAACCCAGTG GAGCTATGGA GCTTAGATGA 
    GATCAATTTC ATGCTGGAAG GAGACTTTTG AAGTGATCGA TGGTTCCTTA 
    GTTTGTAAAT AAAGCTGTGT TGGTGAGTTA CAGTTACAAG CTCTTCTTGT 
    TGAATCGTAA AGACAAACAA CCTAAGTGTT GGTTTCAGGA TTAATCTTCT 
    GTCGTTCTTT TTTGGTTGTT TCAGGATTTT GCTGTTGGGG GATGGTACAA 
    GTCACACCTC AAGCTCTATG CATTGGTATC TCATGAGCCT CTCTTCCATA 
    GAGAGTTTCT CTTTTAATTT TGTCGAAATA AAAAAGGTGT GATGAAGTAA 
    ATAGAGGTAT AATAATATCT ATCTATTAAG TCTTGTTTTG TTCTTTCATT 
    TTTGTATTTC TTTTCTATTT AAAAGACAGT TTATTAGTCT TCTGAGCTCT 
    CTTTTTGATC TTTGTTATAG CGTATCATCA CCCTCNAAAG TGTAATGTTT 
    TGTACCCCCN NNCTTGTTTA NCATTATAAT AAAGTCTNTT TGGAACTTCT 
    NTNTCTGNTC AATGAATNTT NTNTGNCTAA CTTTNCTGAT NGATTTTNAN 
    AAATATGCCN TNTTTATTNN TTNNNNTNAA TNNTTNNAAC NNNTTTNNTT 
    TNAANCNNTT NNAANGATTN TTNNNCCCC

AT3G14230.1

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.2

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5845 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6193; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.3

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR