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12-4585-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4737810 [Map]; Strand: w
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4585-1 - 5-prime edge
    GTCCCACAAG GCGTTGTCAA GGTATGCCAT CAGATCGTCT GACTCATCAG 
    AGTTTGGTTT GAGCTTCTTG GCTGCATTGG TTTCTTCAAC AAATGATGCT
    TCGTTGTTAT TGACAAGCAT TGAAGAGATC TCGGGTGTTT TAGGGCCGTG
    ATCACTCCAC CCGAACTCAG AACAGTCGAA GGAGTTACNT GCCCTGATCG
    GAACTGAAAT ACTGGTATCC ATTGTTACCT CCAGCATCGA ACGAGTTTGT
    TAACCCAAAC TGATTGTTGT ACATCTGAGG CTTCTCTTCC ATGAAACTCA
    TATCACCAAA AGAGTTGTCA AAGGAGTTGT TGCAGTACTG CTGACTCAGA
    TGTGTTGGCT GCTGAACCAA AGTTACGCTT TTGTTTGGTT TAGCCACTGA
    TTTCTGAAGA TTATTAGTCT TAGCACTAGG ACGTTTCTGG GATACGACGC
    TAGGGTTCTT CTCCTCGGGA AAATTCACCT TAGCTTTCGT GCCACGGATT
    CTGCGTGCTG CAGCATCATA AGCTCTTGCT GCTTCCTCAG CAGTGTCGAA
    TGTTCCAAGC CATTCTCGGG AGCCTTTTCT CGGATCACGG ATCTCCGCAG
    CCCATTTTCC CCAAGGACGC TGCCTAATCC CTCGGGTATT GATTCTTCCT
    CTTCCTCTTA AAANATTTCT CANCTTGCTC AGCGGACTCT ACAGTTTTCT
    TGGCATATGC TGAACCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4737694 [Map]; Strand: w
      • AT3G14230.1 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.2 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G14230.3 - [+] show detail - related to AP2 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-4585-1 - 3-prime edge
    TGTGGGACAC CCCACTAGAA GTGGAAGCCA TGCTTGGCGC AGATGCTGGT 
    GCTGTGACTC AGGAAGAGGA AAACCCAGTG GAGCTATGGA GCTTAGATGA
    GATCAATTTC ATGCTGGAAG GAGACTTTTG AAGTGATCGA TGGTTCCTTA
    GTTTGTAAAT AAAGCTGTGT TGGTGAGTTA CAGTTACAAG CTCTTCTTGT
    TGAATCGTAA AGACAAACAA CCTAAGTGTT GGTTTCAGGA TTAATCTTCT
    GTCGTTCTTT TTTGGTTGTT TCAGGATTTT GCTGTTGGGG GATGGTACAA
    GTCACACCTC AAGCTCTATG CATTGGTATC TCATGAGCCT CTCTTCCATA
    GAGAGTTTCT CTTTTAATTT TGTCGAAATA AAAAAGGTGT GATGAAGTAA
    ATAGAGGTAT AATAATATCT ATCTATTAAG TCTTGTTTTG TTCTTTCATT
    TTTGTATTTC TTTTCTATTT AAAAGACAGT TTATTAGTCT TCTGAGCTCT
    CTTTTTGATC TTTGTTATAG CGTATCATCA CCCTCNAAAG TGTAATGTTT
    TGTACCCCCN NNCTTGTTTA NCATTATAAT AAAGTCTNTT TGGAACTTCT
    NTNTCTGNTC AATGAATNTT NTNTGNCTAA CTTTNCTGAT NGATTTTNAN
    AAATATGCCN TNTTTATTNN TTNNNNTNAA TNNTTNNAAC NNNTTTNNTT
    TNAANCNNTT NNAANGATTN TTNNNCCCC

AT3G14230.1

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6244 Blast hits to 5852 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.2

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5845 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6193; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14230.3

Model type
Protein coding
Short Description
related to AP2 2
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 2 (RAP2.2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 12 (TAIR:AT1G53910.2); Has 6242 Blast hits to 5847 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6195; Viruses - 4; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR