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12-4624-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11665475 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 5; Position: 11668524 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -1310; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 20736; Region: intergenic
    3. Chromosome: 5; Position: 11668880 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -1666; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 20380; Region: intergenic
    4. Chromosome: 5; Position: 11670297 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -3083; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 18963; Region: intergenic
    5. Chromosome: 5; Position: 11670823 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -3609; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 18437; Region: intergenic
    6. Chromosome: 5; Position: 11671360 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -4146; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 17900; Region: intergenic
    7. Chromosome: 5; Position: 11675106 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -7892; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 14154; Region: intergenic
    8. Chromosome: 5; Position: 11679471 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -12257; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 9789; Region: intergenic
    9. Chromosome: 5; Position: 11682235 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -15021; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 7025; Region: intergenic
    10. Chromosome: 5; Position: 11683213 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -15999; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 6047; Region: intergenic
    11. Chromosome: 5; Position: 11734329 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -12765; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -4948; Region: intergenic
    12. Chromosome: 5; Position: 11736821 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -15257; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -2456; Region: intergenic
    13. Chromosome: 5; Position: 11736999 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -15435; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -2278; Region: intergenic
    14. Chromosome: 5; Position: 11762887 [Map]; Strand: c
      • AT5G31891.1 - [+] show detail - transposable element gene
        Distance: -10689; Region: intergenic
      • AT5G31909.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -2833; Region: intergenic
    15. Chromosome: 5; Position: 11824378 [Map]; Strand: c
      • AT5G32143.1 - [+] show detail - transposable element gene
        Distance: -2815; Region: intergenic
      • AT5G32161.1 - [+] show detail - transposable element gene
        Distance: -6497; Region: intergenic
    16. Chromosome: 5; Position: 11826863 [Map]; Strand: c
      • AT5G32143.1 - [+] show detail - transposable element gene
        Distance: -5300; Region: intergenic
      • AT5G32161.1 - [+] show detail - transposable element gene
        Distance: -4012; Region: intergenic
    17. Chromosome: 5; Position: 11870710 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 22360; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
    18. Chromosome: 5; Position: 11872486 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 24136; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
    19. Chromosome: 5; Position: 11876573 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 28223; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 30552; Region: intergenic
    20. Chromosome: 5; Position: 11879943 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 31593; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 27182; Region: intergenic
    21. Chromosome: 5; Position: 11885367 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 21758; Region: intergenic
    22. Chromosome: 5; Position: 11901674 [Map]; Strand: c
      • AT5G32228.1 - [+] show detail - transposable element gene
        Distance: 32767; Region: intergenic
      • AT5G32241.1 - [+] show detail - transposable element gene
        Distance: 5451; Region: intergenic
    23. Chromosome: 5; Position: 11958296 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -12938; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -19252; Region: intergenic
    24. Chromosome: 5; Position: 11967402 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -22044; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -10146; Region: intergenic
    25. Chromosome: 5; Position: 11968596 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -23238; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -8952; Region: intergenic
    26. Chromosome: 5; Position: 11969790 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -24432; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -7758; Region: intergenic
    27. Chromosome: 5; Position: 11970028 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -24670; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -7520; Region: intergenic
    28. Chromosome: 5; Position: 11974466 [Map]; Strand: c
      • AT5G32312.1 - [+] show detail - transposable element gene
        Distance: -29108; Region: intergenic
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: -3082; Region: intergenic
    29. Chromosome: 4; Position: 3025501 [Map]; Strand: c
      • AT4G05640.1 - [+] show detail - transposable element gene
        Distance: 1816; Region: intergenic
      • AT4G05918.1 - [+] show detail - transposable element gene
        Distance: -6226; Region: intergenic
    30. Chromosome: 4; Position: 3951056 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -454; Region: promoter
    31. Chromosome: 4; Position: 3952302 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1700; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4880; Region: intergenic
    32. Chromosome: 4; Position: 3954437 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3835; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2745; Region: intergenic
    33. Chromosome: 4; Position: 3954971 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -4369; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2211; Region: intergenic
    34. Chromosome: 3; Position: 13590425 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6451; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11375; Region: intergenic
    35. Chromosome: 3; Position: 13591137 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7163; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10663; Region: intergenic
    36. Chromosome: 3; Position: 13592383 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 8409; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9417; Region: intergenic
    37. Chromosome: 2; Position: 3617470 [Map]; Strand: c
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon15 (CDS)
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -588; Region: promoter
    38. Chromosome: 2; Position: 3623927 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon32 (CDS)
    39. Chromosome: 2; Position: 3624635 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon36 (CDS)
    40. Chromosome: 2; Position: 3713382 [Map]; Strand: w
      • AT2G09850.1 - [+] show detail - transposable element gene
        Distance: 2418; Region: intergenic
      • AT2G09860.1 - [+] show detail - transposable element gene
        Distance: 9067; Region: intergenic
    41. Chromosome: 1; Position: 14484112 [Map]; Strand: w
      • AT1G38430.1 - [+] show detail - transposable element gene
        Distance: -1664; Region: intergenic
      • AT1G38440.1 - [+] show detail - transposable element gene
        Distance: -3231; Region: intergenic
    42. Chromosome: 1; Position: 14509603 [Map]; Strand: w
      • AT1G38550.1 - [+] show detail - transposable element gene
        Distance: 2419; Region: intergenic
      • AT1G38630.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1281; Region: intergenic
    43. Chromosome: 1; Position: 15081955 [Map]; Strand: c
      • AT1G40103.1 - [+] show detail - transposable element gene
        Distance: -599; Region: promoter
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4624-1 - 5-prime edge 
    GTCATATTTG ACTCCAAAAC ACTAACCAAA CTTCTTCTTG CTTCTCAAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11682916 [Map]; Strand: w
      • AT5G31702.1 - [+] show detail - transposable element gene
        Distance: -15702; Region: intergenic
      • AT5G31719.1 - [+] show detail - transposable element gene
        Distance: 6344; Region: intergenic
    Flanking Genome Sequence: 12-4624-1 - 3-prime edge 
    AATATGACTA AATGTCAGGT GTATGAGTGT GTATAACAAC TAGAACCGCA 
    ACTGGACCTT AAAAGCCTAA GTATTATATC CTTGTTAGAA GATACAAAGA 
    CAAAGACTCA TACGGACTAC GGCTACACCA TCAAAGCTAC CAGACCNGGC 
    NGTAAACNAN GCNTGCCNTA TNGAGACCAN TCTNACTCTA TGTCATGTGT 
    CTGATATGAG TATAAAAACT TAAATCGNNN ANNCNTGGGN ATNCTTTACN 
    AAGCCCTTNA NNNNNNNGGT TNNCCCNTTG GNNANNAAAN NANTTCCCNN 
    NNNNCCNNNN NNANNTTTTT NNNGNGNNTT

AT1G38430.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 9.8e-109 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G38440.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 6.0e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G38550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT1G38630.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G38790.1); Has 99 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G40103.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G40104.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 88 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 17; Metazoa - 9; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09850.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 4.4e-23 P-value blast match to aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT2G09860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 6.1e-47 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G05640.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41855.1)
Link
InterPro Scan - TAIR

AT4G05918.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 4.7e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31719.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31891.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31909.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G32143.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G32161.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1)
Link
InterPro Scan - TAIR

AT5G32228.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G32241.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G32312.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31787.1)
Link
InterPro Scan - TAIR

AT5G32345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.2e-183 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR