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12-4683-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18833075 [Map]; Strand: w
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: 103; Region: intergenic
      • AT1G50820.1 - [+] show detail - Aminotransferase-like, plant mobile domain family protein
        Distance: 200; Region: intergenic
    Flanking Genome Sequence: 12-4683-1 - 5-prime edge 
    ATCATAGTTT ATTTACATAA ATCAGTTATT TGATCAAGAG ACACAAGTCA 
    TGTCTTTTAC AGTTGTGTCT TTAGATCAAG AGTTGTGTCT TTTATCAAGA 
    GTCATGTCTT TTACACAAGA CAATGTTTCG TTTCATATAA GTAAAGATCG 
    AGTCTTGTTT CTGCAACACA ACACAACAAT TGAGTTTTGT AATACAATCA 
    AGTCAATAAG ATTGATTACA TTCATACTCT GTTTTTTCGT TCTTACTCTG 
    TTCTTCTTTC ATAACAAAAC ATTAACACTT AATATCACTA TACTTCTTCT 
    TATAACGCAC CGTTACTTGA GAAACGGTGA GGCTATCATC GTCTTCATCA 
    TTGTCTGATG GAACCTGTTT CTGACAAAGA CCCATTGTAC TCCTATGAGC 
    TTGCTTCATG TACTTTCGTC TCTTGTTTGT TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18832959 [Map]; Strand: w
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-4683-1 - 3-prime edge 
    ACTATGATGC GAGATTTGAT TATACTTCAA CACTCCCCCT TAATCATATC 
    TCGGCTTCAC TCCAAGCT

AT1G50810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G50820.1

Model type
Protein coding
Short Description
Aminotransferase-like, plant mobile domain family protein
Computational Description
Aminotransferase-like, plant mobile domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 564 Blast hits to 557 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 564; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR