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12-4719-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 461542 [Map]; Strand: c
      • AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
        Distance: 468; Region: intergenic
      • AT4G01070.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 50; Region: intergenic
    Flanking Genome Sequence: 12-4719-1 - 5-prime edge
    GTCTATCGTC AATAGTTAAA ATAACCGTTT GTTTAAGTTT TAAACACTTG 
    TTGTAATCTC AAAAGTAACA TAGATATTAG ATCATCAATG AGACATAGAT
    GTTAACAATG TGTTTGTTTG GTAATGAGAT ACNGTTATGG GTTTTGATTG
    AAGATCGTCC GTTTCGTGGT TATGGATCAG AGATTTAAGG AAAAACTAAA
    AGTCTAAAAC GTGGATGACC AAGAAAATAA GTGTGTGTGT GGAGTAGGTG
    AAATAGCGTT AACGACAAAT ATACAGAAAA CATGTGTGGG ACCTGAAGAC
    AGCATGTCAT TTTATGACTT GTAAAACGAC TTCCACTTTT GTTTTGTTTT
    GAAGTAGGTT ATTTGCCACT TTCATTTCAT GTGTCAAGTG TTTAAGGCTT
    TAAGCAGAAA TTAATGAAAT ATCCACGTAC AACATCTACG ACTTAGCTTC
    TAGAAATTAC TAGGATGGCA AAAAAATAAA TTTAGGCTNG GAAGGCCCAA
    ATATTCGTAG CCCACACAAT AAATGGTTCT TGAGAGTTAA ATGGTTTGGG
    ATTTAAGAAA GTTTTCTTCT TATAACAGAG TTGGTAAATT TAAAATACAA
    CGGANTATAA TCGAAACAAT CAGNGAANCT ATANAGATAT ATNGATCACT
    TTTCAATTTT TNATGACCNA AAACCTNTNA ATTTNTCCNN CGGNNNTTCC
    TGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 461678 [Map]; Strand: c
      • AT4G01070.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT4G01070.2 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 12-4719-1 - 3-prime edge
    CGATAGACGA TGGATGATTT TCTTGAACAA TATTTAACTA TAAATGCACC 
    ATATTCTTCT AAGCTGATCT TAAACTTACG AATTAATCAA CAGCCAAAAA
    CATATACAAA TAAAAGTTGA GACAAACGAA GCAAAGAAAA GTAGAACATA
    CATATACATA CAGAAACACA TTTGCACAAA TCCCACCGTT GATTATACAA
    ATCATATTAG AACATCAAAT ATTTAGTGGT TGCCATTTTG CTCTAACTCT
    TTTTTATGGG CTTTCCACTT TAAGGCCACA AGATTAAGTG CTTTTGTCGA
    AGACCCATCA TCCTTCAACA CCCTACAAGC TGCTTCCTTC AACTCCTTCA
    TCTTGTTCCT CACTCCTTTG CCTTCTTCAC CTTCCATCAA TCCTTTTACC
    ACTCTTGCCA CCTCTTCTCT TCTAACTAAC CCATCGTCCC CGGCACGCGG
    CCTAAGTGCC GCACGAATAT CTTCACTCAA CAAAACCGCA TTCATCTTCT
    GTTCTGCGTA TAATGGCCAT GCTATAAGTG GAATACCGCT TACTACACTC
    TCTAGAGTCG AATT

AT4G01060.1

Model type
Protein coding
Short Description
CAPRICE-like MYB3
Curator Summary
Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description
CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01070.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta
Computational Description
GT72B1; FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: xenobiotic metabolic process, response to cyclopentenone, response to salt stress, response to toxin, xenobiotic catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7551 Blast hits to 7483 proteins in 336 species: Archae - 0; Bacteria - 81; Metazoa - 2271; Fungi - 41; Plants - 5061; Viruses - 34; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01070.2

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta
Computational Description
GT72B1; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1).
Link
InterPro Scan - TAIR