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12-4723-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000968 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6234; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 344; Region: intergenic
    Flanking Genome Sequence: 12-4723-1 - 5-prime edge
    GCTTGATATG CCTTTTGGTT CATTTTAACC TTCTGTAAAC ATTTTTTCAG 
    ATTTTGAACA AGTAAATCCA AAAAAAAAAA AAAAAAANNC CCCCCCCCCC
    CCAAANTTTT TTNAGGGNNA AAAANNGNCN AAAANNTTNG GGNTAAAAAA
    AAAAANCCNA AAANNNNAAA AACCCTNGGN AANNGNNNNN NNAAAAANNC
    CCCGNNGGGG GGNTTNNNNN AAATTTTTNG GNTNGGGGNN CCCCNGNNCC
    CAAANGGGNA NCCCAAANCC CNNNNNNAAN CTNGGGNNGG GGNANTTTTN
    AAAAANNTTT TTTTTTTTNA NNNNGGGNAA AAANNNCCCC CCNGGGGGNG
    GNANNCCCCC NGNNCNTNNN AAAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001084 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6350; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 228; Region: intergenic
    Flanking Genome Sequence: 12-4723-1 - 3-prime edge
    TATCAAGCTA GATTTTGAAT TACCCTATTT CATCGTATAC ACAAAACTGA 
    TAATGTGGAC ACAGTTGATT TTACTTCTCG ATGACATCGT AGTTTTATTT
    AATTTGGAAA CCACGGCCCA TATGAGCACA TTTCAATTAA AAACCAATGG
    TAAGAGCATT TTCCATGCAA GATTCGAGAG ATATTAACCC AGTGACTGTT
    AAAACAGCTT AGAACCCTAA TAACGAATTT CAATTACTCA ATTTACCATT
    CGCATTTCGC AATAACCAAA CTGAGCCAGT CACAAGGAGT AAACCGAACC
    GGATTATTTA TTTATAAAAT GAAAGAAAGG AAACCAAACA ACAACAGCAG
    TAGTAGTCTG ACGTAAACCA AAAAGCAGGC AGATCAACAA CTAAAAGAAA
    CTCAAATTAC CAAAACAAAC AGGAAATTGC AAACTAAGTT TTTTTACCAT
    ATGCATACAA AGACCATAAA AGGTTCTGAT AATCACCGGT TTCATCTCTC
    AGTATTTAAT CCGGCCATCT CCTTCCGTTA TGACATCGTT GAAAGTGCCA
    CCACTCGGGA TCATCGGCAA CACATGTTCT TGGTGCGGAC AAATCACATC
    CAACAGGTAA GGTCCTGGTG TATCCAGCAT TGTCTGAATA GCTTCTCGGA
    GATCTGCTTT CTTTGTCACC CTCGCCGCTG GAATCCCGCA AGCTGCTGCA
    AACAGCAACA TGTTCGGGAA TATCTCGTCC

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR