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12-4757-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2741178 [Map]; Strand: c
      • AT4G05390.2 - [+] show detail - root FNR 1
        Distance: -511; Region: promoter
      • AT4G05390.1 - [+] show detail - root FNR 1
        Distance: -523; Region: promoter
      • AT4G05400.2 - [+] show detail - copper ion binding
        Distance: 0; Region: exon1 (5UTR)
      • AT4G05400.1 - [+] show detail - copper ion binding
        Distance: -8; Region: promoter
    Flanking Genome Sequence: 12-4757-1 - 5-prime edge 
    GATTCACCTG AGTTTCTGAT TGCTTTCGTC TGAAAATGTT GCTTGAGTAC 
    AGAGATTAGG GTTTTCGACT CTCGACTGTG GAAGAAGAAC ACTGAACTAA 
    CGACGTCGTT TTACATCAAG TTACAACGAC GTCGTTTAAT AAATCACGAT 
    GTCACAAAAC TGTAAATTCA GCTTAAACCG AGGGTTTTCT TGTCTTTTAG 
    AAAACTCCAA TTTGGTTTCT TGGTTCGGTT TTCCATTTCT TTGTATACCG 
    AATGAGAACC GACGTTAATT TTGAATTGAT TTGGTTCAAT TCGATTTAAT 
    TTTTGGTTAT TGTTTCGGCT TACCACCACA TAACCGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2741294 [Map]; Strand: c
      • AT4G05390.2 - [+] show detail - root FNR 1
        Distance: -627; Region: promoter
      • AT4G05390.1 - [+] show detail - root FNR 1
        Distance: -639; Region: promoter
      • AT4G05400.2 - [+] show detail - copper ion binding
        Distance: 0; Region: exon1 (CDS)
      • AT4G05400.1 - [+] show detail - copper ion binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4757-1 - 3-prime edge 
    GGTGAATCAG AAGCATGATT CGAGTTACGA AACCAAAAGC GATCATCGAA 
    TCACTGAGTT ACCATCTTAT CCAAAGATGC TCCGCAAGTG GAACTCCTAA 
    AGGAAAAGCA AAGCTGAAGA CAGGTCAGCC ATTGAAGCGT AACAAACTCT 
    CCATCAAGAA AGGTGGTGGC GGCGGCGGAG CACCTGTTGA AGGAGAGGAA 
    GCAGTTAAAG GAAAAGGTAG AATTTCCGAT GAGAAGCAGA AACTCTACGA 
    GCAATGCTTA AACGCTCCTT GTCCTGTTCG CTACTTGACC CCCCAAGAGA 
    TCGAGCGTGA GGCGCAACGT GAGAAGCTAG GTTTGATTAG TAAAGAGAAG 
    CAACGAGATA TGGAGATCCA GAAGAAAGGA GGAGCTGCTT CAATGGGAGT 
    CACCGATGAG CCGATGCGAA TTGGGACGCC AGGTTTGGAT TACATTTCGT 
    TAGGGATTTT TGAAGCTGAG GAATTGCCTA AGTATAAGCT

AT4G05390.1

Model type
Protein coding
Short Description
root FNR 1
Curator Summary
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational Description
root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05390.2

Model type
Protein coding
Short Description
root FNR 1
Curator Summary
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational Description
root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.1).
Link
InterPro Scan - TAIR

AT4G05400.1

Model type
Protein coding
Short Description
copper ion binding
Computational Description
copper ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 54 Blast hits to 54 proteins in 22 species: Archae - 8; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05400.2

Model type
Protein coding
Short Description
copper ion binding
Computational Description
copper ion binding; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR