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12-4758-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10403 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -39; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-4758-1 - 5-prime edge 
    GCTGGAATCG GGAAATAATT GCCACGTCGA CATTTATTCA GTTCTAGAGT 
    TTCGAATTTT TCCGACTCGT CGTTCTCTGA TTCAGCCGGA GAACTAAACC 
    TCGCGATTCA GAATTGCCTA CCACACCAAG AGTCGGGAGT GCGGAAATTT 
    TATTTTTATA TTTTCTGTTT TCTTTCCCCC CAAAACCATC ACCAAAAAAC 
    TAAAAAGTTA AAAGACGGCG GGAAAGTTGA AAACGATTTG GGCCGAAATT 
    AACTTTGGGC TTGGTTTTAA CGACATAACG TCTCAAGACA AGTGAGTTAA 
    TGCCACGGCC TTTTATTGAG GTAAAAAAGG CACGAATGCT AACCGAAAAT 
    CGTTCCAAAC AACAATTGCT TACGTGGACA TTTTAAAACA TCTGTTCAAT 
    GGTCATTGGT GACTGACTTC AATGAAAATT ACATTGCAAC AATAGCCAAG 
    TATCACAGAA AGTTACATTG CAACAATTTC CACGTCAAAT TTCTAAACAT 
    GCAGAACGGT AATTTACACG GGGAAGGCGC TGAGGAGGCG GAGGGTGCTA 
    CGGAGGGGAT CGCAGGAACA CCGATGAATG AGAAGAATCC AGAGGCGGCA 
    TGATCTTGCT CGTCGAGGAG AGTGGATGAT GCTCTATAAA CGGCCAACAA 
    TATGGTCGAC GTACACCTAA AATGTCTTGC TACGTGGATG CACCACTAAA 
    CCTTTCAACT TTTTTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10287 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4758-1 - 3-prime edge 
    ATTCCAGCGG CGATGGTTTC CGGTGGGAAG TCGCTGGCCG GATTCTTCAG 
    TCCGTCTCGG ATTCTACGCC AACCAAGGCG CTCGAATCGA CAGCTCCTCT 
    ACCTTCTATG GCCGATCTCT TGCTCCAAGG TGATTCTTCG TTTCTTCCTT 
    TTTTTGTCGA ATCGTGTTTG TCATGTGACT CAAAGGAGAT TGAATTATTA 
    TTTGATGCTT CAAGGATGCT CGAAGCT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR