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12-4770-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23267423 [Map]; Strand: w
      • AT1G62830.1 - [+] show detail - LSD1-like 1
        Distance: -221; Region: promoter
    Flanking Genome Sequence: 12-4770-1 - 5-prime edge 
    CATTGAAAGA TTGCACAATA TCAGTTTTGA TCCTTTGTTT TCGCTTAAAC 
    AATACAAGTG AAATTTCATA ATCATTATAC AAATAAGTGA TTATATCTTT 
    ATGTCATGAA AACTTATTAT ACAAAAAATA TATTTATCAT CTAACCAAAA 
    GAGTAAATGG GGGAACATGA CCTAAGATTC TTTTAAACCT CTAGTGTCGT 
    TTTCGAAAGG GAAAGAACAA GACAATTCTT CTTTGTGCCA TAACTCCGTC 
    ATTAGGAATT AAGATTGAAT TATGGGGAAC AAATACATTA GGTATTACTA 
    GATAAAGCAT AATGTAGGTT TTTGTTTGTT TTTTGTTTGT GTGCAACGGC 
    ATATATAATG TAGTATTTAA CATTCTTTTC TGAATCTTGT GTATTGACAT 
    TGTAGCCTTT TTTATATATA GTTTTAATGA CATGTTANAA GAAAAAACTC 
    TAAATACAAA AATTATCTTT TTGCACTCAT ATGTTTTTTT TTGCTAAACT 
    TGTAAATATC ATTAAAATGA AAGCTAGGNG TACAAGAGTA AGTCCTAAAA 
    ATAGGTTNTG CTTTGCCAAA AAAANGAANG GAAAAANCNG ANCCCANTAA 
    AAAGATCTNN GAAAAAGGAA AAGNCCNCGA ATCCNTTTTG GGAAGCCATA 
    ACGCCCTTAA NNGNCNGANN NTTTNAAANN GNNTCCCGGC AGGNANAGGG 
    TNNNGATNAA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23267358 [Map]; Strand: w
      • AT1G62830.1 - [+] show detail - LSD1-like 1
        Distance: -156; Region: promoter
    Flanking Genome Sequence: 12-4770-1 - 3-prime edge 
    TTAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCGTG 
    ATTTCAATGC AATAGTCCTA ACAAATAACA AACCGAAGGG GTACTTTTCT 
    AGATGGGTCT GGGCCAAGGC CCATACATTT CGGGTGCAGA GATCAAACGT 
    TGCCGTATAC CTTCCTTTTT TAGCTAAGAA AAGAAGGCTA CACGTTTGGT 
    AGACTCGTCA CTCACATCAT CACACACAGA GCTAGAGCTA TGTCAACAGA 
    GAGTAAAGAA ACCCGACCCG AAACTAAACC CGAAGACCCG GTAACTCATA 
    CTACTGTGGA TGTACCCGGT GAAGAACCTC TCGGAGAGCT TATCGCTGAC 
    GACGTGAACG AAGTCGTTTC TGATGCGTCG GCGACGGAGA CAGACTTCTC 
    ACTCTCACCG AGCCAATCGG AGCAAAATAT TGAAGAAGAC GGCCAAAACT 
    CACTCGATGA CCAATCGCCA TTAACGGAGC TTCAGCCTCT TCCTCTTCCT 
    CCTCCTCTTC CAGTCGAAGC ACGAATCTCA GAATCGCTCG GTGAAGAAGA 
    ATCTTCCGNT CTGGTAACGG GAGCACCAAT CACAAAAACC CTAATGCGGC 
    GGAGCCCTGG TCCTANAGCA AGAAAACGAC GGCGTTAGGA AACGTTTCNT 
    TCACCGAGAT TAACNCAANC CCNNCTTTCT CAAGAAATCG CCCGCANTAN 
    CGTCNGGCAT AGAGGTGGAT TCAGNANCGC TAATCCNCAA TGTNNGGANG 
    GGTATCCGGT TNATTCCNNC CCGGAGGNAG AAATNT

AT1G62830.1

Model type
Protein coding
Short Description
LSD1-like 1
Curator Summary
Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Computational Description
LSD1-like 1 (LDL1); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 6747 Blast hits to 5826 proteins in 999 species: Archae - 53; Bacteria - 2706; Metazoa - 1658; Fungi - 565; Plants - 779; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Link
InterPro Scan - TAIR