1. Home
  2. Mutant Lines
  3. 12-4796-1

12-4796-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16172296 [Map]; Strand: c
      • AT5G40410.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4796-1 - 5-prime edge 
    ACCATGAGCT CAAAATGCTT GATTGCATCT CTTCCAAACC CATGAGTGGC 
    ATAAGCAGCA AGCATTGCAG TCCACGCCAT ACTATCTGGA GAAGTAATCT 
    CATGAAAAAC CGTAGACGAA TCCTCCAACC TCCCAAGTTT CGAATACAAG 
    TCTAATAACG CTGTCGTTAT ACACTTGTTT CCACTGAACC CACCAAACAT 
    GATTAGCCCA TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16172412 [Map]; Strand: c
      • AT5G40410.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4796-1 - 3-prime edge 
    CTCATGGTTC ACTATGGTAT TAGTCCTGAT CATGTAACCT TCACTCACTT 
    GTTAAATGCT TGTAGTCATT CTGGTCTTGT AGAAGAAGGG AAGCATTATT 
    TCGAAACAAT GTCGAAAAGA TAC

AT5G40410.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 34649 Blast hits to 13101 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 34; Plants - 34234; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Link
InterPro Scan - TAIR