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12-4853-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185263 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -749; Region: promoter
    Flanking Genome Sequence: 12-4853-1 - 3-prime edge 
    GCTGGTATGA TCGCATCCGT TAGTATATGC AATGCAATCG TATATATTCT 
    TTTTTGAAGA CTTGATGAAC CATTCGCCGT GGGTCCCACC CGCTATGTAG 
    GGATACCCTA TCTAGTCTTA ACGAGCTTTG ATGCATGAAA AAATTCGAAA 
    ACAACGCCTT GAACAAGTAA TTTTGGGTCC GTAATATAGC CCAAATCACG 
    AAAATGCCCG AAAAAGTACT TAAAGGTCAA AATTTGGGGT CGACAAAAAG 
    TCAATGGAAA AATTCTATTG TCCTGCTTAT TTCGTCGGAG GGCTATCTTT 
    GGGCTTTCCG AAAAGGTATC AGATGCCAAG TTTGGCCTCA CGGTCTAAAA 
    GTTATGGAGT CATGTAGTTT TAACCAAAAA AAAAANGGTT AANCNTAAAA 
    AAGGGNTNCN CCCCNNGGNC TTCCCGGGNG GNCNCCCNTC NTATTNNTAN 
    TTTNNCCNAA NCNCCCTNAA NTGGGGANTT NTNANGGNAT NACNANCCNG 
    GGCCGTAAAC CNCCNNGNCC NTAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184877 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -363; Region: promoter
    2. Chromosome: 5; Position: 11186886 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2372; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3657; Region: intergenic
    Flanking Genome Sequence: 12-4853-1 - 5-prime edge 
    ATACCAGCAC TAATGCACCA GATCCCATCA GAACTCCGCA GTGAAGCGTG 
    CTTGGGCGAG AGTAGTACTA GGATGGGTGA CCTCCCGGGA AGTCCTCGTG 
    TTGCATCCCT CTTTTATGTT TAACCTTTTT TTTTNGGTTA AAACTTTATN 
    ACTCCNTAAC TTTTAAACCG GGAGGCCAAA CTNANCNTGN GATACCTTTT 
    CGGAAAGCCC AAANATAGCC CTCCGACAAA ATAANCNGGA CAANGGAACT 
    TTTCCNTNGA CTTTTNGTCN ACCCCAAATT TNNACCTTTA AGTNCTTTTT 
    NGGGCNTTTT CGNNATTNGG GTTNTNTTAC AAACCCAAAA TTACTNGTTN 
    AANCNTNGTT TTCAAATTTT TTNNTGCNTN AAAGCTCGTT AACNCTAAAN 
    GGGGTNTCCC TACNTAGGGG GGGGGACCCN CGGNAAANGG TTNATNAAGT 
    NTTCAAAAAA AAATNTNTNC AATGGCTTNG CNTNTAATAN CGGNNGCAAT 
    CNTNCCANCN NTANNGCNCC GGATNACCAG CCNGGGCCGT NAACCCCNGG 
    CCCNTAAAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR