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12-4865-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 654465 [Map]; Strand: w
      • AT3G02920.2 - [+] show detail - Replication protein A, subunit RPA32
        Distance: -115; Region: promoter
      • AT3G02920.1 - [+] show detail - Replication protein A, subunit RPA32
        Distance: -115; Region: promoter
      • AT3G02930.2 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: -591; Region: promoter
      • AT3G02930.1 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: -841; Region: promoter
    Flanking Genome Sequence: 12-4865-1 - 3-prime edge 
    NNNGTAGTNA GTGGGCTGAA TCANATTGAT ATTCNAGAAN AAATGCTCCT 
    GANNACNAAA ATTCNCTNGG AAANCTTTAA AAATNAGTCG CGGGAAAATG 
    AGAGAGATTT TCGGCNGGGA NCTCTATNNA ATTNNCCATT ACNTNTTAAT 
    NATTNATTTT ATGANAGTAA CTTGAGATTT NATAATAANA NANGTNGAAA 
    TTCGTGAAAG ATATGATAAA TTAGTAAATT CCAGAAACTT ATTANAAGCG 
    GCGGATCGAA TT

AT3G02920.1

Model type
Protein coding
Short Description
Replication protein A, subunit RPA32
Computational Description
RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2); Has 524 Blast hits to 524 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 124; Plants - 108; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02920.2

Model type
Protein coding
Short Description
Replication protein A, subunit RPA32
Computational Description
RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2).
Link
InterPro Scan - TAIR

AT3G02930.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF827)
Computational Description
Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1); Has 245110 Blast hits to 119184 proteins in 3857 species: Archae - 3264; Bacteria - 55991; Metazoa - 95493; Fungi - 19215; Plants - 14009; Viruses - 1145; Other Eukaryotes - 55993 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02930.2

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF827)
Computational Description
Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1).
Link
InterPro Scan - TAIR