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12-4907-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952489 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1887; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4693; Region: intergenic
    2. Chromosome: 4; Position: 3952667 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2065; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4515; Region: intergenic
    3. Chromosome: 2; Position: 3619119 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 12-4907-1 - 5-prime edge 
    CCTCCAAAAC ACTAACCAAC CTTTTTCATG CTTCTCAAAG CTACCAGCNC 
    GNGCCGTNGA CCACGCGTAG CCCTATAGCT TTGTGTCTTG TAACAAGGAA 
    ACACTACTTA GGCTTTAAAG AACGGGTTGC GGTTTAAGTT TTTATACTCA 
    ATCATACACA TGACATCAAG TCATATTCGA CTCCAAAACA CTAACCAACC 
    TTCTTCTTGC TTCTCAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3623678 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron30 (CDS)
    Flanking Genome Sequence: 12-4907-1 - 3-prime edge 
    TTTGGAGGCG AATATGACTT GATGTTATGT GTATGATTGA GTATAAGAAC 
    TTAAACTGCA ACCCGATCTT AAAAGCCTAA TTAGTGTTTC CTTGTTAAAA 
    GACACAAAGC AAAAGACTCA TATGGACTTT GTCTACACCA TGAAAGCT

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR