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12-5070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11586934 [Map]; Strand: c
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-5070-1 - 5-prime edge 
    ATTAGAAGAA TGGTGGAGAA ACGAGCAGTT CTGGTTAATC GGTGGCACGA 
    GCGCACATTT AGTCGCTGTA CTACAAGGTA TACTCAAAGT CATAGCCGGA 
    GTCGAAATCT CCTTCACCTT GACTTCAAAA TCTTCAACAG GAGGAGATGA 
    TGAAGACGAC GAGTTCGCTG ATCTTTATCT GTTTAAATGG ACTGCTCTGA 
    TGATTCCACC GTTAACAATC ATAATCTTGA ACATCGTAGC GATACTTTTC 
    GCGGTTTGTA GGACGGTTTT CAGTGCGAAT CCACAGTGGA GCAATCTTCT 
    TGGAGGGACA TTCTTTGCCA GTTGGGTTTT GCTTCATATG TATCCGTTTG 
    CCAAAGGTTT AATGGGAAGA GGAGGAAAAA CACCGACAGT TGTGTATGTT 
    TGGTCGGGAC TTATTGCTAT TTGCTTGTCT CTTCTCTACA TTACCATTAA 
    GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11587050 [Map]; Strand: c
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-5070-1 - 3-prime edge 
    CTTCTAATGA GATACCTGAC CATTTGACTT CAAGAACAGC TAATCCACAG 
    AGAGACAATG TGATAATCAA AAGGTAAATG AGGAATGATC CAGTGAGGGT 
    TTCAACAACG AAGTGACCGG AGAAGAGAGA TAACNGGCGG GAGGAAGCAG 
    TAGGTTAAGA TGAAAATGCT GGTGAATGGG TAGATTCCAA CATTGAGGTA 
    AGCGATTCTC TGGAGGAGTT TGAGTTTTGG ACCGGCGAAA ATGGCGTTGT 
    TTCGAGAGAA GAAGATCTCT ACTGATCCCG TAGCCCATCG TAGAACCTGG 
    TGGAGTCGAT CAGTTAGGTT TATCGGTGCG CTTCCACGGA ATGCGTCTGG 
    CTCTGTCACG CAGTAGAATG ATCTCCATCC TTTTTCGTGC ATTCGAAAAC 
    CGGTCACTAC GTCTTCGGTT ACAGAACCAT ATATCCATCC AACGTTGAAT 
    CCCCATTCAG TTTTGTCTTC GTACCAGCAC GAGATCACGT TAACCGCCTC 
    GTTCACAGTC GCGAAATCAA GCGGTTTGCG GCTTCCAGTC AAANAGCCAG 
    GAGGGCGTCC TAGCCGGCTT GAGTGAACTG TAGCTAGTGG TCTACCTTCA 
    AACTCTGCCA CCTTTACCGA ATT

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR