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12-5095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18071338 [Map]; Strand: w
      • AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-5095-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTCTTTCTA TTCTCTCTTC CGCCGCTTTT TCCATCGTTC GAAAGTAAAG 
    TTGCTCGCTT TACTCGTTCA AGCATTCAAC TTTAGAATCC GATCGAATCC 
    TCCTGTAACA GCAATGATGA ATCGGATC

AT4G38670.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1594 Blast hits to 1578 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 72; Plants - 1416; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.2

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1592 Blast hits to 1576 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 72; Plants - 1413; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38670.3

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR