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12-5122-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22710174 [Map]; Strand: c
      • AT1G61560.2 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon9 (CDS)
      • AT1G61560.3 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon9 (CDS)
      • AT1G61560.4 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon9 (CDS)
      • AT1G61560.1 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 12-5122-1 - 5-prime edge
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGTAAGAA 
    TCTTACCTCT GGCTACCGTT CATTCCCTTC ATCGTAAGCA ACAACCAAAA
    CCTTTAGACT AAACCTATTT TGTTTCGGTT TCAACTCCGT AACAAGAATG
    AATGTATAAA CAAACTGCAG GTGATTCTTA TTGTTGGAAC AAAACTTCAA
    GTGATAATAA CAAAACTAGG ACTTAGAATC CAAGAGAAAG GCGACGTAGT
    GAAAGGCACA CCGCTAGTTC AGCCCGGTGA TCATTTCTTC TGGTTCGGTC
    GTCCACGTTT CATTCTCTTC CTCATTCACT TAGTCCTCTT CACGGTATAC
    ATTCATCTTT TACTTTCTAC TCTCTCTCCT TACAAAAATG CCTGAAATTT
    AACCATTTCT TTTTCGCCAT CATCAGAACG CGTTTCAACT AGCTTTCTTT
    GTCTGGAGTA CGGTAAGCAA GCAATCATGC ATTCTCCACG AACTTGAAAC
    GTAATAATAC CTATACAATC ATCATTTTNG TCAAAATCAT TTGTTATCTC
    TTCAGTATGA ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22708802 [Map]; Strand: w
      • AT1G61550.1 - [+] show detail - S-locus lectin protein kinase family protein
        Distance: -976; Region: promoter
      • AT1G61560.2 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G61560.3 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G61560.4 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon14 (3UTR)
      • AT1G61560.1 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: exon14 (3UTR)
    Flanking Genome Sequence: 12-5122-1 - 3-prime edge
    TTATTTAGTG ATTTGTTAAT ATGCTAAATG AAACCAGTTC TTGTAAATTT 
    TCTATACTGT GTTTGTTAAA ACCAGCCCTT GAAGCT

AT1G61550.1

Model type
Protein coding
Short Description
S-locus lectin protein kinase family protein
Computational Description
S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61490.1); Has 121113 Blast hits to 119449 proteins in 4468 species: Archae - 96; Bacteria - 13448; Metazoa - 44854; Fungi - 10099; Plants - 34551; Viruses - 435; Other Eukaryotes - 17630 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61560.1

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description
MILDEW RESISTANCE LOCUS O 6 (MLO6); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G11310.1); Has 556 Blast hits to 535 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 551; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61560.2

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description
MILDEW RESISTANCE LOCUS O 6 (MLO6); CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G11310.1).
Link
InterPro Scan - TAIR

AT1G61560.3

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description
MILDEW RESISTANCE LOCUS O 6 (MLO6); CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G11310.1).
Link
InterPro Scan - TAIR

AT1G61560.4

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).
Computational Description
MILDEW RESISTANCE LOCUS O 6 (MLO6); CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G11310.1).
Link
InterPro Scan - TAIR