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12-5157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 92960 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -963; Region: promoter
    Flanking Genome Sequence: 12-5157-1 - 5-prime edge 
    AACCAAACCT TGATGAGTCA CTGTAAAACA CGACTATTGG TTGAACAATC 
    AGTTCCAATC GAGGCTCACA AAGTCAAAGC ATGCTTGTAA GATATTTGGA 
    GTAATTGAAG GTACAGGTGT AATCAGAGCG TTTCTTGAAT TGCCGAAATG 
    AAGTTTAGCC CTATGGCTAT AGAAGCAATA AGCCATTTTT ATATTCATAA 
    CTTTAGAGGT ATTAATAAGA AACATATATA ATTTTTTTTA TAAATGTATT 
    GACAAAAAAT CAAGTAAAAA TAAGCAAGAT GCAAAACATA AGCAACATTT 
    CTAATTAATA TTATATAATT TTTTATAATG ATTTTATACA TGAAAAAATC 
    TCTAATTAAT AGATATGACA CATGTGCGAT CATGTGAGTT ATCAATTTTG 
    AATAATTTTT TAATACTAAA TTGACATATT GTTTGATCAG AAAATGTCAT 
    TTTTTGAAAC TAAGTGAATG AATAAAGGGT TGAGCTAAGC AATATATAAT 
    TGTTGATGAT GAAATAATAA CATGAATACA AATTATATTT ATATGTGTGT 
    ATCAATTAGT GTAATATTTA ANANANAACC ATTGGAGTNA GCCTTACAAN 
    ACAATNTNTG ATCACCNTTG GAAAACTTTA AAGCTATTAC TATGGGNAAA 
    ACTCNATTGC TTGATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 92844 [Map]; Strand: w
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-5157-1 - 3-prime edge 
    GTTTGGTTTA CGTCGACCCT TCATAGCCGC TGGCACTATC CTCCTCTCAC 
    CATTGTGGTA CTACTTATCG GCTATGCAAT CGACGTTGGG GTTTTGATTG 
    GGGATTATTG TCCAATCCAT ATGTATTTTA CTCATTGGTT TATGTAGCNT 
    TAGTCCTTAG ACATCGCTAA GATCATGTTC AAGGTCCGTG TAGGGCCTTC 
    TAGTTGATGT AGAAGCGGGA AATGCTAAGA GAACACAAGT TGAAAACCAG 
    CTTTTATAAA AATGGTGAAA AAAAAGACAA AATTGGCTCA AATTCTCTAG 
    TAAATTAGGA AGATTGTTAA ATCAAATGCA TGCTTCGAAG ATGTTAAAAT 
    AGTGTGGACT ACAAAGCAAA CCAGAGTATC AAACTCAATT GAGTCGGGTT 
    TAAATAATAT TTTGGGCTGC TTGATATAAG AAAAAAAAAC TTTATTGAAC 
    CCATTTAAGG CCCAATNTAA GTGATAGGGA AAATGANAAA TGANACTCAT 
    TGGTTCGTGT CTCGCNCCAA AATCAAGCCT CCTTCACNCT CAAGATTCCA 
    CCCATGTTGT GGAGAACCGG TGTACTCTAG GCTGATTAAA ACAACATATT 
    CGATGGTCCA AGANACCAAA GCAACTTCAA CATATTGGCC TATAANATAC 
    TCCATTTAAT CAATGTAAAT CATATAGTTC TTATA

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR