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12-5161-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23042744 [Map]; Strand: w
      • AT1G62320.1 - [+] show detail - ERD (early-responsive to dehydration stress) family protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 12-5161-1 - 5-prime edge 
    CCGCGGAATG CTTAAAACAA GAATGTAAAT AAAAGTTGAG AGCAGAGTTC 
    CAAGAGAGTN ATANAAGTGC GGGTCAAGTG AATCGAACTT ACTCGTTTGN 
    TGGATTGTTT AAGAAAAGAA TCNAGCTGTN CAAAAGCAGA TCCAGTGATT 
    ACGCTACCGA GGAAAACATT CACAAGGTTG AAAATATAGT ATCGAAAAGC 
    CGCTCTTCTC TCTAACGATG ATATTGAAAT AAACCCTTCG AATTTCGACA 
    TGATCATCAA TATTGTNGGC AGGAATATCA AAAAGAGCTT CAAGACAATA 
    CCGGGAAGAA AACCTTGGAT CAATGATTTC ATTAACTTGC TGCACACGCA 
    AGATTGATCA AGAATTGAAT TAAGCCTTAT TCTTGAAATG GTAAGTAAAA 
    AACTTGAGAA TGTACCTACT TTTTGACAAT GGGACTGAGG AACGGAGCGG 
    ATTTCTCGAT ACCTTCAATA CTCNCTAANG ATTGCACAAA TGCCGATNGG 
    GATGATGAAA NAGAACGNTG AGGAAGAANA ANGCGATGGN CATTACAAAA 
    TCTTCTTACA GNGAGAGATA CGTTNNGGCA TTGGCNAAAT TTTGGCCANN 
    ACATTNNTNT GGCCNTCAGN AGCCCATTNG GNTNNANCNT TGTANNTGGA 
    TTCTGCNTNN GTTGNGGNTN NCNCNCANAC CNNANNAGCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23042628 [Map]; Strand: w
      • AT1G62320.1 - [+] show detail - ERD (early-responsive to dehydration stress) family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 12-5161-1 - 3-prime edge 
    TTCCGCGGAC AGTTGGAGTC GCGATACCGA TAAAAGCAAC GTTCTTTATA 
    ACGTATATAA TGGTAGACGG TTGGGCGGGT GTGGCAGGGA GAAATCTTTA 
    GGCTGAAACC ATTAGTCATT TTCCATTTAA AGAACTTCTT CTTTGTGAAA 
    ACTGAAAAGG ATAGAGAAGA AGCTATGGAT C

AT1G62320.1

Model type
Protein coding
Short Description
ERD (early-responsive to dehydration stress) family protein
Computational Description
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G11960.1); Has 1443 Blast hits to 1265 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 708; Plants - 430; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Link
InterPro Scan - TAIR