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12-5166-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2343966 [Map]; Strand: c
      • AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -496; Region: promoter
    Flanking Genome Sequence: 12-5166-1 - 5-prime edge 
    CATAAAACCA TCTAACTAAA AATTTAGCTC ACTTACATGC ATGAACAAAC 
    CAAATTGCCT CATTGAAACT GCCTACTTGA AACATGTTAT AAAATCAAGA 
    TTTTTCCTTG TCTTTTTCTT GATTCGAACA AAGAAAGAGT TAAACATGTT 
    GACATACAAA TCAACAAAAG AACCGGCGAT GGTTAAGGAA CTTCGACAAG 
    GGAACCCATT CGTCAAAAGT AGTTTGTTAT TCGTTTACCG GTTTTTGATA 
    TTAGTACCAG ATTTGTTTTT GACATCTTAA AGAACGTTAA GATTGTTTCG 
    TACTATTTAA TAGTTTCACA CTTATTTTAT ACTGTATTTA GAAGCT

AT3G07340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link
InterPro Scan - TAIR