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12-5174-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 94813 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-5174-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    TTACTCTCTG AGTCTGGCGT TATTCCTGAT TGTTGTATTA TAGGAAGGTT 
    TAGATAAATT ATAAGAAGCA TAAATGAATA ATATCGAATC AATTTGCATA 
    TAGAAAAAAA TAAACCTGTA TCAAGAACAC CAATAATAAC ATCTCTCTCT 
    GCTTTTAGAT GTCTTTTTGC TGTCAAAGGA AGTCCAACAA AATCCCAAGA 
    TTTTGTCGTG TGAAGTTTGC GATATTGATT TCGGGATACA CTAACAACTT 
    CTTCCATCTC TGCACCAGTG CATGGATGGG AGTTATATGA ATCTCACTAG 
    CTAGTGCTTT GTTTTGGGAA AAATATCAAA AACAAATAAT GTTACGTACC 
    CATCATCTTC TTAGCTTCAT GTGGAGAAAG CT

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR