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12-5179-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8883955 [Map]; Strand: c
      • AT4G15560.1 - [+] show detail - Deoxyxylulose-5-phosphate synthase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-5179-1 - 5-prime edge
    GTGGTGGAGA GTTGAAGAAG TATAAAGATG GAGACTTTAA AAAAATGGGG 
    TGATGAAGTA AAACGACAAG AAAGCCAACT TCATGGATCA CGAATTTTAT
    GTAACCGTGC NTGATGATAT TAAAAAAAAA NCAAAGANAG AAAAAANANA
    TGGNGANATG GTTCGTCNTC CNCAAANAAC TTGAAATTTT GGTNGGGCCN
    CGTCANCCNT GAAATCCAAG TTTNGGATAN ATNTTGANNA TNTTNTTTNT
    NTNCNTTAGN NCATNTGTNT NTNGNTNGTC CCTTNTTTNA TTTNTAAAGT
    TNTTTAAAAN NAAANTGAAN NAAAANAAAN TAANTAANTT TTTTCCCCCT
    TCCTTNCCAA ANACNATAAN GGCANTNTAN TNTTTTGGGG TNTAAANAAA
    NGGANTTTAA AANGATTNTA NAAAAATNGN AATTNGATTT TTTTTTAANA
    NCCAAAANAA TNGANCTTTT AGGGGCANAA NACNCAAAGC TTNCTTTTAA
    AACTGNTCAA AAAAAGTTTA CCTTCCGATN GGNGNNGACA AGAAAATCAA
    GAGGGTTAAT AAGGGGGGAA AGGGATNTNT CCAATTTCTC CATTACCCCC
    CTGGGGCAAN AAAAAAACAT TTGCCTGGCG AAAATGCAAG TAANAGGATT
    ACCNNCCCGG GCCGGGNACC ANCNNGCCCN TTTNA

AT4G15560.1

Model type
Protein coding
Short Description
Deoxyxylulose-5-phosphate synthase
Curator Summary
Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
Computational Description
CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).
Link
InterPro Scan - TAIR