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12-5202-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17169434 [Map]; Strand: w
      • AT1G45249.2 - [+] show detail - abscisic acid responsive elements-binding factor 2
        Distance: -1579; Region: intergenic
      • AT1G45230.1 - [+] show detail - Protein of unknown function (DUF3223)
        Distance: 103; Region: intergenic
    Flanking Genome Sequence: 12-5202-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTGAC TCTAGCATAT AGTTTAATAA GTTTTGAATT 
    TGCTTGGAAA AATTCTTTAA GAATATTCTC TTAACACAAA ATTATATATA 
    CTTATGTTTT AACTGGTTGC TTTGCACACA AAAAATGGTT TTAACNTGGT 
    TGCTAATAGA ATATTAAAGC CCTGCTCACA AGTGTGTACT GGTTCTCTCT 
    ACCTCTGCAC ATAAGTTCAA TGTAACAGAT ATCATCATAT AAACGCTAAA 
    GATTTCAAGA TAATGAACAT ATTAAAGACT TGTGATGGTT CTAATTCCTC 
    ATATCTCCTG CGGAAACCAT ATTTTCTAGA AAGTTCCATT CGTATTTCCA 
    ACTCAAAGAA AAACAGTGAC TGGATCTTCT GTGTCTGAGT TCTCACTCCA 
    AAACCTTGTA GTGGATC

AT1G45230.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3223)
Computational Description
Protein of unknown function (DUF3223); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3223) (TAIR:AT3G46630.1); Has 208 Blast hits to 208 proteins in 32 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G45249.2

Model type
Protein coding
Short Description
abscisic acid responsive elements-binding factor 2
Curator Summary
Leucine zipper transcription factor that binds to the abscisic acid (ABA)
Computational Description
abscisic acid responsive elements-binding factor 2 (ABF2); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: hydathode, leaf vascular system, whole plant, root, cultured cell; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: abscisic acid responsive element-binding factor 1 (TAIR:AT1G49720.2); Has 532 Blast hits to 413 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 7; Fungi - 4; Plants - 509; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR