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12-5203-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 515348 [Map]; Strand: c
      • AT1G02475.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G02480.1 - [+] show detail - pre-tRNA
        Distance: -146; Region: promoter
    Flanking Genome Sequence: 12-5203-1 - 3-prime edge 
    ATTGATCGTG TTCATGTTAA TTGCTACTAC AGACATTGAA GCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 515232 [Map]; Strand: c
      • AT1G02475.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G02480.1 - [+] show detail - pre-tRNA
        Distance: -262; Region: promoter
    Flanking Genome Sequence: 12-5203-1 - 5-prime edge 
    CGATCAATCA CTTGTCCAAA ACCTGTAAAA CCCCAAATAT CCAATCACCA 
    GATTTGCTTC GATCGCNAAC CCTNNNCATA TGNCTNTCNT TCGCTCTGTT 
    TCCAAAAACC CTAAATGGCT TCTCCTCTTA CTCTTCTTCC GTTAGTCGCA 
    GATCGAGATT CATCATTCCC AAGAGACGAC GATTCTCTGT TTCCATGGAG 
    TGGCAAGACT GCTCGTAAAA ATCTCTCCTT TATCCTCTTC TCTGCTTCGA 
    TTCCACTTTA TTTGTAGAAA TTGATATGAT TCTGTTTTCA ATCTTTGTTG 
    GTTTGGAGAA AACAGAGTAA AGATGGAGGT CGATGTTCCA GTATCAGTAG 
    CGTATAATTT CTACTTGGAT CGTGAATCTT TTCCTAAATG GATGCCTTTT 
    ATTTCATCTG TCCAGGTGGA TTTGATTTTT TGATCTATCT CTCAAAGTTT 
    CAATCTTTGA AAGCT

AT1G02475.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01883.1); Has 515 Blast hits to 515 proteins in 169 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02480.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR