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12-5220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30103556 [Map]; Strand: c
      • AT1G80020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-5220-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TCTGATCCTC CCAAGAAACG CCATAGGTCT 
    TCTGCTTCAT ACACCCCTCT AGATCAAGAC CGTTGCTACA ATCAGATGGC 
    AAAGATGATT ATCATGCATG ATTATCCCCT TCACATGGTT GAGCATTCTG 
    GATTTACTGG TTTCGTGCAG GCCCTTTGTC CCCAGTTCAC TATGGCAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30103560 [Map]; Strand: c
      • AT1G80020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-5220-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    GGTGGTGGTG GGAGTAACGA TTTGTGCGAG GGTGCTGCTG TCGTCTCGGT 
    TCATGGGACA AATACCCAGT TGAATGTGAC AGTTTAAGAT GGCTAGTTCC 
    TGCCAACTTT TGGCCATTAA TGTAGGCGAA GGATTTGCAG GCAGTGGTTG 
    CAGCAAGCT

AT1G80020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-62 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR