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Mutant Lines
12-5227-1

12-5227-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 8429205 [Map]; Strand: w
- AT1G23860.1 - [+] show detail - RS-containing zinc finger protein 21
  Distance: 0; Region: intron1 (5UTR)
- AT1G23860.3 - [+] show detail - RS-containing zinc finger protein 21
  Distance: 0; Region: intron1 (5UTR)
- AT1G23860.4 - [+] show detail - RS-containing zinc finger protein 21
  Distance: 0; Region: intron1 (5UTR)
- AT1G23860.2 - [+] show detail - RS-containing zinc finger protein 21
  Distance: 0; Region: exon1 (5UTR)

GGTCCAAATT CCCGACATAA ACCCTCGTCA TGTTGCAAAG ATCAGTTGAA 
TCTGAACGAA AGAGAATCGA ATTTTGTGAA GAAATATGGA TATCGATAAT 
AGTTACAGCG AGTAGTTAAC AAGGTACCTG AGATTCTTGG TCCTGAGCGG 
CGAAGCGGGA TGTTTTAGGG TTCAGACTCA GACTACGGCG AGGAAAGAGA 
GTAACCAAGT TATTTCATTA TTATATGAAA ACTGAAAAGT AAAAAAAAAT 
TAACATCATA TTATTTGGTC ATTTATTAGT TATTTCATGG TCCCTTATTT 
TTCGGTAATC CATATATTCA TAAACAAAGT TTTAGCGACC AAAATGTAAG 
ACTAGTCTCC CATAGTCGAT TAGTTAACGT AAAAAGAGAA TTGAGGTGAA 
AGCGGATTTT GAAACTATGC AAAACATCTT TGACAACAAA AGTTATGCAA 
ACATGTTTCT AGAGTTTGAT GTCTAATTAC TGTAACTTGA TGTGATTCTC 
AGTCTGAAAA AAACTAATGG GCCTAAAACC CATAACCTTT TGGTTAAAAT 
TTTAAAAATA TGAGCAAGTT TCAGTTGCTT AATGGCCCAT ATGAGTTGGT 
TTTGGTTTTC AACTTTTGCA TCAGNACTTG NATCTTCTTA AATTTTCAAA 
ATATAGTGAG GCTGATTAAA TCTAANTTNG GAGNNGGCAA GNGTAACAAT 
NGN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 8429089 [Map]; Strand: w
  - AT1G23860.1 - [+] show detail - RS-containing zinc finger protein 21
    Distance: 0; Region: exon2 (CDS)
  - AT1G23860.3 - [+] show detail - RS-containing zinc finger protein 21
    Distance: 0; Region: exon2 (CDS)
  - AT1G23860.4 - [+] show detail - RS-containing zinc finger protein 21
    Distance: 0; Region: exon2 (CDS)
  - AT1G23860.2 - [+] show detail - RS-containing zinc finger protein 21
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-5227-1 - 3-prime edge
```
TTTGGACCCA CGCGTCACCG AAAGAGAACT CGAAGACGAA TT
```

AT1G23860.1

Model type: Protein coding
Short Description: RS-containing zinc finger protein 21
Curator Summary: Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description: RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23860.2

Model type: Protein coding
Short Description: RS-containing zinc finger protein 21
Curator Summary: Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description: SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23860.3

Model type: Protein coding
Short Description: RS-containing zinc finger protein 21
Curator Summary: Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description: SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23860.4

Model type: Protein coding
Short Description: RS-containing zinc finger protein 21
Curator Summary: Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description: RS-containing zinc finger protein 21 (RSZP21); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2).
Link: InterPro Scan - TAIR