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12-5282-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25392413 [Map]; Strand: c
      • AT1G67730.1 - [+] show detail - beta-ketoacyl reductase 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-5282-1 - 5-prime edge
    AGTAAAGTTC ACCTGGCACT GAACATCAAT CCCACTCTTC TTATACTCAA 
    CATGTAGACA CTTTGTGAAC TGATCCACGT ACCTAAAACA ACAAAACAAA
    CAAAAAAAGT CACTACTTTA AACCACTCAA AAGCATCATC TCAAACAAAC
    AAATACAAGA CAAGAAGATT CACTTACGTT TTAGCACCAG CATAAACAGA
    GTAAAAAGGA TAAGAAGGAA TAAGAGCAGC AGCACCAGAA CCCATATTAA
    TAATAGCACC TTTCTTCCTC TTAAGCATAT TAGGCAACAC AGCTTGAGTA
    ACTTTAGTAG TTCCTTCAAC ATTGATCTTA ATCAAGTTAT TGATCAACTC
    TTCATCAACC TCATGAAAAT ACTTAGCATA AGGATAAGAC ATGCCAGCAT
    TATTAATCAA AATCCCAACA TCTAATCCTT CAATACTCTC CTTAATCCGT
    TTCACACCTT CATCAATATC TCCAGAGAAA TCCATCACAA CGGTCAAGAT
    CTGAGTTTGA CTATACTTAG ATCTGATGGA ATCAGAGACA TCTTTGAGCT
    TGTCTGGGTT ACGAGCAACG AGTATAAGGT TAAGACCTTT CTGGGCTAAC
    TGAAAGGCGA AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25392529 [Map]; Strand: c
      • AT1G67730.1 - [+] show detail - beta-ketoacyl reductase 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-5282-1 - 3-prime edge
    ACTTTACTGA ATCAATTTTG TCGTCTTAGT AACATGATTT TGCTTGAGAT 
    TTTGATTAGA AGTAGGATTG ATAAATGAGT AAAACCAATC TTATCTTTGT
    AGGATAGTAG TTCCTGGCTT ATCAAAGTTA ATCTGTTGCC TGATTAGAAG
    TTTTGTCTGA TAATATAGAC AGGAAAATGT GTAAAATGTT GTTTATTGAA
    TCTCTAAAAG ATGTGATTCT GTCATGGTTT CCTGACTCTG TTTCTGTTTA
    TATAATGGAC CTGGAATGTT GATTATTTTT GTTAGTTTTG GGTTTTGCAA
    ATGAGGAACT ATTGCATCAC ATGTCTCTTT GTTGAATACT TCGATGATGT
    GAGATCTTGT TTCTGATTGT TTCTTCAGGC CGATTTTGTG AAAGAATGTC
    AAAACTATAA AACTAGGCAA TCTGTGTAGT GAACTTTANA TACTTAATTG
    TAACCACTTT CGGATGTAGA ATANTTATGC CAGAGATTGT ATTTGACTGA
    TCTGTGGCAG TTTCCATGTA TGTTATAGCT CACTGTGGAG TTGTATACTA
    CCAAAACAAC NTTATTGGGG TCACACTGCT TCAATNAGTN TTTGAAANCT
    TGATTGTNCC CGCTAATTAA GTGGGGTGTT GTNTTATAGG GTTCCCTTGG
    TATGGTTGCA TNNNNNATGA CNGNAANTTA GAAGGAGCAT NCTTNCTTAN
    NTGCNTCACC CAGANGGTTN CCNAAAGC

AT1G67730.1

Model type
Protein coding
Short Description
beta-ketoacyl reductase 1
Curator Summary
Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.
Computational Description
beta-ketoacyl reductase 1 (KCR1); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity, acetoacetyl-CoA reductase activity; INVOLVED IN: very long-chain fatty acid biosynthetic process, embryo development, cuticle development; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 2 (TAIR:AT1G24470.1); Has 86831 Blast hits to 86679 proteins in 3373 species: Archae - 739; Bacteria - 59178; Metazoa - 5127; Fungi - 3946; Plants - 2216; Viruses - 0; Other Eukaryotes - 15625 (source: NCBI BLink).
Link
InterPro Scan - TAIR