1. Home
  2. Mutant Lines
  3. 12-5326-1

12-5326-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 336675 [Map]; Strand: w
      • AT3G02000.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -3653; Region: intergenic
      • AT3G02010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1290; Region: intergenic
    Flanking Genome Sequence: 12-5326-1 - 5-prime edge
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTTTGTGTG TTTACCTTTT TTAATTTACT AATTAATAAT
    GTAGTACGTA CTATATAGTT AAAGAAAGAG GGCAAAATGG TAAATAAGAG
    AAGAGCAGCC TTTAAGAAAA GAAGAGAAGC AATATTAACT CTCTCTATGT
    ATCTTAAAGA TGTACTGTAA TAAATAAAAA TAAAAGAAGA AGAAGAAGGA
    GAAGGGGCCG TTAAAGGAGT AACCGACAAG ACGGCTTTAC TTTTTCAGGC
    TTTGCTCCTT TGATTGCCTC ATCTCGCTGC TGACGTTATC CTCCCGTTGA
    CTGTCTACGC ACTCCCTTTT TTTTTTTTNC CCCAAANTTT TTTCCCNTTT
    TTTNNNGCNA AATTTNNNNN GGGNGGGGGT TTNGANTTTT NNAAAGGNCN
    NAAAACCCCN NAAGGGTNCC CNNGGNNGNA AANNCNTNNA NTTTNAAAAA
    CCTTTNAAAN NNTNNNNCCA TTTTTNGGGN AAAANNTTNG GTNTTTTCNG
    GGGNTTTTNN TTNAAAAANT TTNGGGCCCN NNNAAANNNN ANNNNGGGGT
    TTTTCCCAAA ATNNNCNNAT TTTTTNNTTN CCCCCCNGGA AAAACNNNAA
    AACCTCCNGG GGNNANCCCC CNGGGNTTTT TTNNTTTNAA ANAANNNNNA
    NGGGGGGGNT TNNNNNGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 336608 [Map]; Strand: w
      • AT3G02000.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -3586; Region: intergenic
      • AT3G02010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1357; Region: intergenic
    Flanking Genome Sequence: 12-5326-1 - 3-prime edge
    CGCGTGGAAC GTGTTAAAAA AATTTTAAAG GAACACCAAT TCAGTTCTTA 
    AAATAACGAA TAAAAAAAGA GAGGAGTGTT TTGTGTACGA ATAAAAAAAG
    AGAGGAGTGT TTTGTGTATT AATAAACAAT AGTCGAGGAT CATTCGGAGT
    GCTAAGGTAA AAGTCTATTA ATATACTCCT CTTGTATGGA AGATAATACT
    CAAAGAATAA TGTGTTCACG TAAATACGAC TAGTACTACA TAAAAGCCTT
    TCAGTTATCA GTGGGGACTG CAAATTCCGT ATCAATATGA TCCCTAATAA
    ATAAGCTAAG GGATGATTAA TTGGGTTTAG GTCTGTTTAA GCGAGAAAGA
    GAAAAAAAGG TTCAGGGTAT AGGGGGAGGC GAGGCGGCTC GCGTGGGGCA
    CAAAACTCTG TTTCATCTCT TCTTCTCTCT CTCTTTTTTT TCTTTTCTTT
    TATTGNTGNN GNCTTCTTAA TTCTACTTCT ATTTACCACT TTGTTGCCAA
    TGTCCCTCTC TTCCTCCCNA TGGTCAATCA CCCTNTNTNT NATNNNNAAT
    NNNTTTTTTN NTAATTNNNN TCCNNNTGAN NNATTNGNGT NTATCCCNTN
    NCTTTNNNNC NNNNNNATNN ACNNNNNTNN NNNTTTNTTT TTTNNNNNCN
    NNNNNNNT

AT3G02000.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).
Computational Description
ROXY1; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G14070.1); Has 1149 Blast hits to 1147 proteins in 188 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 109; Plants - 748; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR